[Debian-med-packaging] Problems to find classes that should be in itext1.jar

[Andreas Tille]

On Mon, May 23, 2016 at 04:16:32PM +0200, Emmanuel Bourg wrote:
> Le 23/05/2016 à 15:53, Andreas Tille a écrit :
> 
> > Source/mesquite/genesis/lib/RateMatrixGTRModel.java:29: error: cannot find symbol
> >         TransitionProbability transProbs = null;
> >         ^
> >   symbol:   class TransitionProbability
> >   location: class RateMatrixGTRModel
> 
> TransitionProbability.java is in the LibrarySource/pal/substmodel
> directory, did you remove it from the upstream tarball?

Yes, since we have packaged this as libpal-java I removed the whole dir
LibrarySource/pal.  I need to check this detail.
 
> >   symbol:   class MRJOSType
> >   location: class MesquiteFile
> > Source/mesquite/lib/MesquiteFile.java:1068: error: cannot find symbol
> >                                                 MRJOSType type = MRJFileUtils.getFileCreator(writingFile);
> 
> If the MRJ stuff is specific to OS X I guess you can remove it.

But deleting what?  Just these very lines featuring MRJ* ?

Kind regards

        Andreas. 

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