[Debian-med-packaging] picard-tools and htsjdk

[Vincent Danjean]

  Hi,

Le 23/11/2016 à 16:16, Andreas Tille a écrit :
> Hi Vincent,
> 
> On Sun, Nov 06, 2016 at 07:28:11PM +0100, Andreas Tille wrote:
>> Hi Vincent,
>>
>> On Sun, Nov 06, 2016 at 11:56:28AM +0100, Vincent Danjean wrote:
>>>   I just saw that picard-tools 2.7.1+dfsg-1 has been uploaded (it is
>>> even in testing now). But I noticed two things:

>>> 2) the htsjdk source package is still at 2.6.1+dfsg-1 in the archive
>>>    (upstream released the 2.7.0 version)
>>
>> At the time when I realised picard-tools 2.7.0 there was no version bump
>> of htsjdk.  (I was explicitly checking for this.)

  This part is been the longer because I've been hit by the gradle bug
and then by a lack of free time...
  I just uploaded htsjdk 2.7.0

>>> 1) there is no depends on libhtsjdk-java (whereas the jar is in the
>>>    classpath)
>>
>> Just fix it and upload. :-)
> 
> Currently  picard-tools remains at 2.7.1+dfsg-1.  Feel free to ping me
> if you have some time constraints ...

  I'm currently building it with the added dependencies. I should upload
it in a few minutes. Note that I choose to be tight: picard-tools depends
(at build an run time) on htsjdh >= 2.7 but also htsjdk << 2.8. We will
see in the future is this need to be relaxed.

  Regards,
    Vincent