[Debian-med-packaging] Bug#824402: Forwarded upstream

[Andreas Tille]

Hi,

I managed to build the latest upstream version of sra-toolkit 2.7.0.
I made sure that the vschema files will be found but since I've got

$ latf-load --quality PHRED_33 -o test /usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq
2016-09-01T13:27:09 latf-load.2.7 warn: file="/usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq"
2016-09-01T13:27:09 latf-load.2.7 warn: /usr/share/doc/python-biopython-doc/Tests/Quality/sanger_93.fastq:1:12:syntax error, unexpected fqWS
2016-09-01T13:27:09 latf-load.2.7 warn: The file contained no records that were processed.
2016-09-01T13:27:09 latf-load.2.7 err: libs/kproc/queue.c:356:KQueuePop: data empty while reading file within alignment module - accession="test" errors="1" status="failure"
2016-09-01T13:27:09 latf-load.2.7 err: libs/kproc/queue.c:356:KQueuePop: data empty while reading file within alignment module - load failed

I reported the issue upstream as issue #39 [1].

Kind regards

      Andreas.

[1] https://github.com/ncbi/sra-tools/issues/39

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