[Debian-med-packaging] Bug#835720: salmon: FTBFS: BAMQueue.tpp:88:29: error: no matching function for call to 'spdlog::logger::warn()'

[Sascha Steinbiss]

Hi Andreas,

> I'm now
> facing the next configure issue which seems that BOOST_INCLUDEDIR and
> BOOST_LIBRARYDIR are not found.  Any clue how to get the latest state
> of salmon Git build?

It was a missing build-dependency on libboost-timer-dev. I also added the necessary build-deps on libdivsufsort and libsparsehash, see git.

However, the build still fails with:

In file included from /build/salmon-0.7.1+ds1/include/UtilityFunctions.hpp:5:0,
                 from /build/salmon-0.7.1+ds1/include/SBModel.hpp:7,
                 from /build/salmon-0.7.1+ds1/src/SBModel.cpp:1:
/build/salmon-0.7.1+ds1/include/SalmonUtils.hpp:32:27: fatal error: RapMapUtils.hpp: No such file or directory

which suggests that salmon also uses parts of the previous embedded or downloaded RapMap source tree to build salmon, not just the binary.
I’m not familiar enough with RapMap’s intended use to decide whether we should introduce a rapmap-dev package given that it doesn’t seem to build a library. Any hints?

Cheers
Sascha

> 
> Kind regards
> 
>      Andreas.
> 
> On Wed, Sep 07, 2016 at 10:31:17AM +0200, Andreas Tille wrote:
>> Hi,
>> 
>> thanks to Sascha's help I finalised rapmap, ITPed #836914 and uploaded.
>> 
>> Kind regards
>> 
>>       Andreas.
>> 
>> --
>> http://fam-tille.de
>> 
>> _______________________________________________
>> Debian-med-packaging mailing list
>> Debian-med-packaging at lists.alioth.debian.org
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>> 
> 
> --
> http://fam-tille.de

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