[Debian-med-packaging] Bug#837587: ITP: libgkarrays -- library to query large collection of NGS sequences

[Andreas Tille]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>

* Package name    : libgkarrays
  Version         : 2.1.0
  Upstream Author : Nicolas PHILIPPE <nicolas.philippe at lirmm.fr> and others
* URL             : http://crac.gforge.inria.fr/gkarrays/
* License         : CeCILL
  Programming Lang: C++
  Description     : library to query large collection of NGS sequences
 Gk-arrays are provided as a simple-to-use C++ library dedicated to
 queries on large collection of sequences as produced by high-throughput
 sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche).
 .
 Gk-arrays index k-mers of reads and allows one to answer different queries
 on that read collection (e.g. how many reads share this k-mer? where does
 this k-mer occur in the read collection?).
 .
 Gk-arrays consist of a space-efficient alternative to hash tables while
 being similar in terms of query times.


Remark: This package is a precondition for another Debian Med target (crac)
and will be maintained at
    https://anonscm.debian.org/git/debian-med/libgkarrays.git