[Debian-med-packaging] Bug#838340: seqan-dev and libseqan2-dev: error when trying to install together
Ralf Treinen
treinen at free.fr
Tue Sep 20 06:42:22 UTC 2016
Package: libseqan2-dev,seqan-dev
Version: libseqan2-dev/2.2.0+dfsg-1
Version: seqan-dev'1.4.2+dfsg-1 at all, seqan-dev/1.4.1+dfsg-2
Severity: serious
User: treinen at debian.org
Usertags: edos-file-overwrite
Date: 2016-09-20
Architecture: amd64
Distribution: sid
Hi,
automatic installation tests of packages that share a file and at the
same time do not conflict by their package dependency relationships has
detected the following problem:
Selecting previously unselected package libseqan2-dev.
(Reading database ... 10967 files and directories currently installed.)
Preparing to unpack .../libseqan2-dev_2.2.0+dfsg-1_all.deb ...
Unpacking libseqan2-dev (2.2.0+dfsg-1) ...
Selecting previously unselected package seqan-dev.
Preparing to unpack .../seqan-dev_1.4.2+dfsg-1_all.deb ...
Unpacking seqan-dev (1.4.2+dfsg-1) ...
dpkg: error processing archive /var/cache/apt/archives/seqan-dev_1.4.2+dfsg-1_all.deb (--unpack):
trying to overwrite '/usr/include/seqan/align/align_base.h', which is also in package libseqan2-dev 2.2.0+dfsg-1
dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
Errors were encountered while processing:
/var/cache/apt/archives/seqan-dev_1.4.2+dfsg-1_all.deb
E: Sub-process /usr/bin/dpkg returned an error code (1)
This is a serious bug as it makes installation fail, and violates
sections 7.6.1 and 10.1 of the policy. An optimal solution would
consist in only one of the packages installing that file, and renaming
or removing the file in the other package. Depending on the
circumstances you might also consider Replace relations or file
diversions. If the conflicting situation cannot be resolved then, as a
last resort, the two packages have to declare a mutual
Conflict. Please take into account that Replaces, Conflicts and
diversions should only be used when packages provide different
implementations for the same functionality.
Here is a list of files that are known to be shared by both packages
(according to the Contents file for sid/amd64, which may be
slightly out of sync):
/usr/include/seqan/align.h
/usr/include/seqan/align/align_base.h
/usr/include/seqan/align/align_cols.h
/usr/include/seqan/align/align_config.h
/usr/include/seqan/align/align_iterator_base.h
/usr/include/seqan/align/align_metafunctions.h
/usr/include/seqan/align/align_traceback.h
/usr/include/seqan/align/alignment_algorithm_tags.h
/usr/include/seqan/align/alignment_operations.h
/usr/include/seqan/align/dp_algorithm_impl.h
/usr/include/seqan/align/dp_band.h
/usr/include/seqan/align/dp_cell.h
/usr/include/seqan/align/dp_cell_affine.h
/usr/include/seqan/align/dp_cell_linear.h
/usr/include/seqan/align/dp_formula.h
/usr/include/seqan/align/dp_formula_affine.h
/usr/include/seqan/align/dp_formula_linear.h
/usr/include/seqan/align/dp_matrix.h
/usr/include/seqan/align/dp_matrix_navigator.h
/usr/include/seqan/align/dp_matrix_navigator_score_matrix.h
/usr/include/seqan/align/dp_matrix_navigator_score_matrix_sparse.h
/usr/include/seqan/align/dp_matrix_navigator_trace_matrix.h
/usr/include/seqan/align/dp_matrix_sparse.h
/usr/include/seqan/align/dp_meta_info.h
/usr/include/seqan/align/dp_profile.h
/usr/include/seqan/align/dp_scout.h
/usr/include/seqan/align/dp_setup.h
/usr/include/seqan/align/dp_trace_segment.h
/usr/include/seqan/align/dp_traceback_adaptor.h
/usr/include/seqan/align/dp_traceback_impl.h
/usr/include/seqan/align/evaluate_alignment.h
/usr/include/seqan/align/gap_anchor.h
/usr/include/seqan/align/gapped_value_type.h
/usr/include/seqan/align/gaps_anchor.h
/usr/include/seqan/align/gaps_array.h
/usr/include/seqan/align/gaps_base.h
/usr/include/seqan/align/gaps_iterator_anchor.h
/usr/include/seqan/align/gaps_iterator_array.h
/usr/include/seqan/align/gaps_iterator_base.h
/usr/include/seqan/align/global_alignment_banded.h
/usr/include/seqan/align/global_alignment_hirschberg_impl.h
/usr/include/seqan/align/global_alignment_myers_hirschberg_impl.h
/usr/include/seqan/align/global_alignment_myers_impl.h
/usr/include/seqan/align/global_alignment_specialized.h
/usr/include/seqan/align/global_alignment_unbanded.h
/usr/include/seqan/align/local_alignment_banded.h
/usr/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h
/usr/include/seqan/align/local_alignment_enumeration.h
/usr/include/seqan/align/local_alignment_enumeration_banded.h
/usr/include/seqan/align/local_alignment_enumeration_unbanded.h
/usr/include/seqan/align/local_alignment_unbanded.h
/usr/include/seqan/align/local_alignment_waterman_eggert_impl.h
/usr/include/seqan/align/matrix_base.h
/usr/include/seqan/arg_parse.h
/usr/include/seqan/arg_parse/arg_parse_argument.h
/usr/include/seqan/arg_parse/arg_parse_ctd_support.h
/usr/include/seqan/arg_parse/arg_parse_doc.h
/usr/include/seqan/arg_parse/arg_parse_exceptions.h
/usr/include/seqan/arg_parse/arg_parse_option.h
/usr/include/seqan/arg_parse/arg_parse_parse.h
/usr/include/seqan/arg_parse/arg_parse_type_support.h
/usr/include/seqan/arg_parse/argument_parser.h
/usr/include/seqan/arg_parse/tool_doc.h
/usr/include/seqan/arg_parse/xml_support.h
/usr/include/seqan/bam_io.h
/usr/include/seqan/bam_io/bam_alignment_record.h
/usr/include/seqan/bam_io/bam_alignment_record_util.h
/usr/include/seqan/bam_io/bam_header_record.h
/usr/include/seqan/bam_io/bam_index_bai.h
/usr/include/seqan/bam_io/bam_io_context.h
/usr/include/seqan/bam_io/bam_sam_conversion.h
/usr/include/seqan/bam_io/bam_tags_dict.h
/usr/include/seqan/bam_io/cigar.h
/usr/include/seqan/bam_io/read_bam.h
/usr/include/seqan/bam_io/read_sam.h
/usr/include/seqan/bam_io/write_bam.h
/usr/include/seqan/bam_io/write_sam.h
/usr/include/seqan/basic.h
/usr/include/seqan/basic/aggregate_concept.h
/usr/include/seqan/basic/allocator_chunkpool.h
/usr/include/seqan/basic/allocator_interface.h
/usr/include/seqan/basic/allocator_multipool.h
/usr/include/seqan/basic/allocator_simple.h
/usr/include/seqan/basic/allocator_singlepool.h
/usr/include/seqan/basic/allocator_to_std.h
/usr/include/seqan/basic/alphabet_adapt_builtins.h
/usr/include/seqan/basic/alphabet_bio.h
/usr/include/seqan/basic/alphabet_concept.h
/usr/include/seqan/basic/alphabet_math.h
/usr/include/seqan/basic/alphabet_profile.h
/usr/include/seqan/basic/alphabet_qualities.h
/usr/include/seqan/basic/alphabet_residue.h
/usr/include/seqan/basic/alphabet_residue_funcs.h
/usr/include/seqan/basic/alphabet_residue_tabs.h
/usr/include/seqan/basic/alphabet_simple_type.h
/usr/include/seqan/basic/alphabet_storage.h
/usr/include/seqan/basic/array_construct_destruct.h
/usr/include/seqan/basic/basic_aggregate.h
/usr/include/seqan/basic/basic_allocator.h
/usr/include/seqan/basic/basic_alphabet.h
/usr/include/seqan/basic/basic_concept.h
/usr/include/seqan/basic/basic_container.h
/usr/include/seqan/basic/basic_debug.h
/usr/include/seqan/basic/basic_exception.h
/usr/include/seqan/basic/basic_fundamental.h
/usr/include/seqan/basic/basic_iterator.h
/usr/include/seqan/basic/basic_math.h
/usr/include/seqan/basic/basic_metaprogramming.h
/usr/include/seqan/basic/basic_parallelism.h
/usr/include/seqan/basic/basic_proxy.h
/usr/include/seqan/basic/basic_smart_pointer.h
/usr/include/seqan/basic/basic_tangle.h
/usr/include/seqan/basic/basic_type.h
/usr/include/seqan/basic/boost_preprocessor_subset.h
/usr/include/seqan/basic/builtin_functions.h
/usr/include/seqan/basic/concept_checking.h
/usr/include/seqan/basic/container_concept.h
/usr/include/seqan/basic/debug_helper.h
/usr/include/seqan/basic/debug_test_system.h
/usr/include/seqan/basic/fundamental_comparison.h
/usr/include/seqan/basic/fundamental_concepts.h
/usr/include/seqan/basic/fundamental_conversion.h
/usr/include/seqan/basic/fundamental_metafunctions.h
/usr/include/seqan/basic/fundamental_tags.h
/usr/include/seqan/basic/fundamental_transport.h
/usr/include/seqan/basic/holder_base.h
/usr/include/seqan/basic/holder_simple.h
/usr/include/seqan/basic/holder_tristate.h
/usr/include/seqan/basic/hosted_type_interface.h
/usr/include/seqan/basic/iterator_adapt_pointer.h
/usr/include/seqan/basic/iterator_adapt_std.h
/usr/include/seqan/basic/iterator_adaptor.h
/usr/include/seqan/basic/iterator_base.h
/usr/include/seqan/basic/iterator_concept.h
/usr/include/seqan/basic/iterator_interface.h
/usr/include/seqan/basic/iterator_position.h
/usr/include/seqan/basic/macro_deprecated.h
/usr/include/seqan/basic/math_functions.h
/usr/include/seqan/basic/math_log_space_value.h
/usr/include/seqan/basic/metaprogramming_control.h
/usr/include/seqan/basic/metaprogramming_enable_if.h
/usr/include/seqan/basic/metaprogramming_logic.h
/usr/include/seqan/basic/metaprogramming_math.h
/usr/include/seqan/basic/metaprogramming_type.h
/usr/include/seqan/basic/pair_base.h
/usr/include/seqan/basic/pair_bit_compressed.h
/usr/include/seqan/basic/pair_packed.h
/usr/include/seqan/basic/profiling.h
/usr/include/seqan/basic/proxy_base.h
/usr/include/seqan/basic/proxy_iterator.h
/usr/include/seqan/basic/test_system.h
/usr/include/seqan/basic/triple_base.h
/usr/include/seqan/basic/triple_packed.h
/usr/include/seqan/basic/tuple_base.h
/usr/include/seqan/basic/tuple_bit_compressed.h
/usr/include/seqan/basic/volatile_ptr.h
/usr/include/seqan/consensus.h
/usr/include/seqan/consensus/consensus_base.h
/usr/include/seqan/consensus/consensus_library.h
/usr/include/seqan/consensus/consensus_realign.h
/usr/include/seqan/consensus/consensus_score.h
/usr/include/seqan/file.h
/usr/include/seqan/file/file_base.h
/usr/include/seqan/file/file_cstyle.h
/usr/include/seqan/file/file_forwards.h
/usr/include/seqan/file/file_interface.h
/usr/include/seqan/file/file_mapping.h
/usr/include/seqan/file/file_page.h
/usr/include/seqan/file/string_external.h
/usr/include/seqan/file/string_mmap.h
/usr/include/seqan/find.h
/usr/include/seqan/find/find_abndm.h
/usr/include/seqan/find/find_ahocorasick.h
/usr/include/seqan/find/find_base.h
/usr/include/seqan/find/find_begin.h
/usr/include/seqan/find/find_bndm.h
/usr/include/seqan/find/find_bom.h
/usr/include/seqan/find/find_hamming_simple.h
/usr/include/seqan/find/find_horspool.h
/usr/include/seqan/find/find_multi.h
/usr/include/seqan/find/find_multiple_bfam.h
/usr/include/seqan/find/find_multiple_shiftand.h
/usr/include/seqan/find/find_myers_ukkonen.h
/usr/include/seqan/find/find_pattern_base.h
/usr/include/seqan/find/find_pex.h
/usr/include/seqan/find/find_score.h
/usr/include/seqan/find/find_set_horspool.h
/usr/include/seqan/find/find_shiftand.h
/usr/include/seqan/find/find_shiftor.h
/usr/include/seqan/find/find_simple.h
/usr/include/seqan/find/find_wild_shiftand.h
/usr/include/seqan/find/find_wumanber.h
/usr/include/seqan/gff_io.h
/usr/include/seqan/gff_io/gff_io_base.h
/usr/include/seqan/graph_algorithms.h
/usr/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h
/usr/include/seqan/graph_algorithms/graph_algorithm_hmm.h
/usr/include/seqan/graph_algorithms/graph_algorithm_lis_his.h
/usr/include/seqan/graph_align.h
/usr/include/seqan/graph_align/graph_algorithm_refine_align.h
/usr/include/seqan/graph_align/graph_algorithm_refine_aligngraph.h
/usr/include/seqan/graph_align/graph_algorithm_refine_annotation.h
/usr/include/seqan/graph_align/graph_algorithm_refine_exact.h
/usr/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h
/usr/include/seqan/graph_align/graph_algorithm_refine_fragment.h
/usr/include/seqan/graph_align/graph_algorithm_refine_inexact.h
/usr/include/seqan/graph_align/graph_algorithm_refine_scoring.h
/usr/include/seqan/graph_align/graph_impl_align.h
/usr/include/seqan/graph_align/graph_impl_align_adapt.h
/usr/include/seqan/graph_msa.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_base.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_distance.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_io.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_kmer.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_library.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_msa.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_progressive.h
/usr/include/seqan/graph_msa/graph_align_tcoffee_refinement.h
/usr/include/seqan/graph_types.h
/usr/include/seqan/graph_types/graph_base.h
/usr/include/seqan/graph_types/graph_drawing.h
/usr/include/seqan/graph_types/graph_edgestump.h
/usr/include/seqan/graph_types/graph_idmanager.h
/usr/include/seqan/graph_types/graph_impl_automaton.h
/usr/include/seqan/graph_types/graph_impl_directed.h
/usr/include/seqan/graph_types/graph_impl_hmm.h
/usr/include/seqan/graph_types/graph_impl_oracle.h
/usr/include/seqan/graph_types/graph_impl_tree.h
/usr/include/seqan/graph_types/graph_impl_trie.h
/usr/include/seqan/graph_types/graph_impl_undirected.h
/usr/include/seqan/graph_types/graph_impl_wordgraph.h
/usr/include/seqan/graph_types/graph_interface.h
/usr/include/seqan/graph_types/graph_iterator.h
/usr/include/seqan/graph_types/graph_iterator_adjacency.h
/usr/include/seqan/graph_types/graph_iterator_bfs.h
/usr/include/seqan/graph_types/graph_iterator_dfs.h
/usr/include/seqan/graph_types/graph_iterator_edge.h
/usr/include/seqan/graph_types/graph_iterator_outedge.h
/usr/include/seqan/graph_types/graph_iterator_vertex.h
/usr/include/seqan/graph_types/graph_utility_parsing.h
/usr/include/seqan/index.h
/usr/include/seqan/index/find_index.h
/usr/include/seqan/index/find_index_approx.h
/usr/include/seqan/index/find_index_esa.h
/usr/include/seqan/index/find_index_qgram.h
/usr/include/seqan/index/find_pigeonhole.h
/usr/include/seqan/index/find_quasar.h
/usr/include/seqan/index/find_swift.h
/usr/include/seqan/index/index_base.h
/usr/include/seqan/index/index_bwt.h
/usr/include/seqan/index/index_childtab.h
/usr/include/seqan/index/index_dfi.h
/usr/include/seqan/index/index_esa_algs.h
/usr/include/seqan/index/index_esa_algs_multi.h
/usr/include/seqan/index/index_esa_base.h
/usr/include/seqan/index/index_esa_drawing.h
/usr/include/seqan/index/index_esa_stree.h
/usr/include/seqan/index/index_fm.h
/usr/include/seqan/index/index_fm_compressed_sa.h
/usr/include/seqan/index/index_fm_compressed_sa_iterator.h
/usr/include/seqan/index/index_fm_dox.h
/usr/include/seqan/index/index_fm_lf_table.h
/usr/include/seqan/index/index_fm_rank_dictionary_wt.h
/usr/include/seqan/index/index_fm_right_array_binary_tree.h
/usr/include/seqan/index/index_fm_right_array_binary_tree_iterator.h
/usr/include/seqan/index/index_fm_sparse_string.h
/usr/include/seqan/index/index_fm_stree.h
/usr/include/seqan/index/index_forwards.h
/usr/include/seqan/index/index_lcp.h
/usr/include/seqan/index/index_lcp_tree.h
/usr/include/seqan/index/index_pizzachili.h
/usr/include/seqan/index/index_pizzachili_find.h
/usr/include/seqan/index/index_pizzachili_string.h
/usr/include/seqan/index/index_qgram.h
/usr/include/seqan/index/index_qgram_openaddressing.h
/usr/include/seqan/index/index_sa_btree.h
/usr/include/seqan/index/index_sa_bwtwalk.h
/usr/include/seqan/index/index_sa_lss.h
/usr/include/seqan/index/index_sa_mm.h
/usr/include/seqan/index/index_sa_qsort.h
/usr/include/seqan/index/index_shawarma.h
/usr/include/seqan/index/index_shims.h
/usr/include/seqan/index/index_skew3.h
/usr/include/seqan/index/index_skew7.h
/usr/include/seqan/index/index_skew7_multi.h
/usr/include/seqan/index/index_wotd.h
/usr/include/seqan/index/pipe_merger3.h
/usr/include/seqan/index/pipe_merger7.h
/usr/include/seqan/index/pizzachili_api.h
/usr/include/seqan/index/pump_extender3.h
/usr/include/seqan/index/pump_extender7.h
/usr/include/seqan/index/pump_lcp_core.h
/usr/include/seqan/index/pump_separator7.h
/usr/include/seqan/index/radix.h
/usr/include/seqan/index/repeat_base.h
/usr/include/seqan/index/shape_base.h
/usr/include/seqan/index/shape_gapped.h
/usr/include/seqan/index/shape_onegapped.h
/usr/include/seqan/index/shape_predefined.h
/usr/include/seqan/index/shape_threshold.h
/usr/include/seqan/map.h
/usr/include/seqan/map/map_adapter_stl.h
/usr/include/seqan/map/map_base.h
/usr/include/seqan/map/map_chooser.h
/usr/include/seqan/map/map_skiplist.h
/usr/include/seqan/map/map_vector.h
/usr/include/seqan/map/sumlist.h
/usr/include/seqan/map/sumlist_mini.h
/usr/include/seqan/map/sumlist_skip.h
/usr/include/seqan/misc/edit_environment.h
/usr/include/seqan/misc/priority_type_base.h
/usr/include/seqan/misc/priority_type_heap.h
/usr/include/seqan/modifier.h
/usr/include/seqan/modifier/modifier_alphabet.h
/usr/include/seqan/modifier/modifier_alphabet_expansion.h
/usr/include/seqan/modifier/modifier_functors.h
/usr/include/seqan/modifier/modifier_iterator.h
/usr/include/seqan/modifier/modifier_reverse.h
/usr/include/seqan/modifier/modifier_shortcuts.h
/usr/include/seqan/modifier/modifier_string.h
/usr/include/seqan/modifier/modifier_view.h
/usr/include/seqan/parallel.h
/usr/include/seqan/parallel/parallel_algorithms.h
/usr/include/seqan/parallel/parallel_atomic_misc.h
/usr/include/seqan/parallel/parallel_atomic_primitives.h
/usr/include/seqan/parallel/parallel_macros.h
/usr/include/seqan/parallel/parallel_splitting.h
/usr/include/seqan/parallel/parallel_tags.h
/usr/include/seqan/pipe.h
/usr/include/seqan/pipe/pipe_base.h
/usr/include/seqan/pipe/pipe_caster.h
/usr/include/seqan/pipe/pipe_counter.h
/usr/include/seqan/pipe/pipe_echoer.h
/usr/include/seqan/pipe/pipe_edit_environment.h
/usr/include/seqan/pipe/pipe_filter.h
/usr/include/seqan/pipe/pipe_iterator.h
/usr/include/seqan/pipe/pipe_joiner.h
/usr/include/seqan/pipe/pipe_namer.h
/usr/include/seqan/pipe/pipe_sampler.h
/usr/include/seqan/pipe/pipe_shifter.h
/usr/include/seqan/pipe/pipe_source.h
/usr/include/seqan/pipe/pipe_tupler.h
/usr/include/seqan/pipe/pool_base.h
/usr/include/seqan/pipe/pool_mapper.h
/usr/include/seqan/pipe/pool_sorter.h
/usr/include/seqan/platform.h
/usr/include/seqan/random.h
/usr/include/seqan/random/random_base.h
/usr/include/seqan/random/random_beta.h
/usr/include/seqan/score.h
/usr/include/seqan/score/score_base.h
/usr/include/seqan/score/score_edit.h
/usr/include/seqan/score/score_matrix.h
/usr/include/seqan/score/score_matrix_data.h
/usr/include/seqan/score/score_matrix_io.h
/usr/include/seqan/score/score_simple.h
/usr/include/seqan/seeds.h
/usr/include/seqan/seeds/banded_chain_alignment.h
/usr/include/seqan/seeds/banded_chain_alignment_impl.h
/usr/include/seqan/seeds/banded_chain_alignment_profile.h
/usr/include/seqan/seeds/banded_chain_alignment_scout.h
/usr/include/seqan/seeds/banded_chain_alignment_traceback.h
/usr/include/seqan/seeds/basic_iter_indirect.h
/usr/include/seqan/seeds/seeds_base.h
/usr/include/seqan/seeds/seeds_combination.h
/usr/include/seqan/seeds/seeds_extension.h
/usr/include/seqan/seeds/seeds_global_chaining.h
/usr/include/seqan/seeds/seeds_global_chaining_base.h
/usr/include/seqan/seeds/seeds_global_chaining_gusfield.h
/usr/include/seqan/seeds/seeds_seed_base.h
/usr/include/seqan/seeds/seeds_seed_chained.h
/usr/include/seqan/seeds/seeds_seed_diagonal.h
/usr/include/seqan/seeds/seeds_seed_set_base.h
/usr/include/seqan/seeds/seeds_seed_set_non_scored.h
/usr/include/seqan/seeds/seeds_seed_set_scored.h
/usr/include/seqan/seeds/seeds_seed_set_unordered.h
/usr/include/seqan/seeds/seeds_seed_simple.h
/usr/include/seqan/seq_io.h
/usr/include/seqan/seq_io/fai_index.h
/usr/include/seqan/seq_io/genomic_region.h
/usr/include/seqan/seq_io/read_embl.h
/usr/include/seqan/seq_io/read_genbank.h
/usr/include/seqan/sequence.h
/usr/include/seqan/sequence/adapt_array_pointer.h
/usr/include/seqan/sequence/iter_concat_virtual.h
/usr/include/seqan/sequence/segment_base.h
/usr/include/seqan/sequence/segment_infix.h
/usr/include/seqan/sequence/segment_prefix.h
/usr/include/seqan/sequence/segment_suffix.h
/usr/include/seqan/sequence/segment_utils.h
/usr/include/seqan/sequence/sequence_concatenator.h
/usr/include/seqan/sequence/sequence_forwards.h
/usr/include/seqan/sequence/sequence_interface.h
/usr/include/seqan/sequence/sequence_lexical.h
/usr/include/seqan/sequence/sequence_shortcuts.h
/usr/include/seqan/sequence/string_alloc.h
/usr/include/seqan/sequence/string_array.h
/usr/include/seqan/sequence/string_base.h
/usr/include/seqan/sequence/string_block.h
/usr/include/seqan/sequence/string_cstyle.h
/usr/include/seqan/sequence/string_packed.h
/usr/include/seqan/sequence/string_packed_old.h
/usr/include/seqan/sequence/string_set_base.h
/usr/include/seqan/sequence/string_set_concat_direct.h
/usr/include/seqan/sequence/string_set_dependent_generous.h
/usr/include/seqan/sequence/string_set_dependent_tight.h
/usr/include/seqan/sequence/string_set_owner.h
/usr/include/seqan/sequence_journaled.h
/usr/include/seqan/sequence_journaled/journal_entries_sorted_array.h
/usr/include/seqan/sequence_journaled/journal_entry.h
/usr/include/seqan/sequence_journaled/sequence_journaled.h
/usr/include/seqan/sequence_journaled/sequence_journaled_iterator.h
/usr/include/seqan/store.h
/usr/include/seqan/store/store_align.h
/usr/include/seqan/store/store_align_intervals.h
/usr/include/seqan/store/store_all.h
/usr/include/seqan/store/store_annotation.h
/usr/include/seqan/store/store_base.h
/usr/include/seqan/store/store_contig.h
/usr/include/seqan/store/store_intervaltree.h
/usr/include/seqan/store/store_io.h
/usr/include/seqan/store/store_io_gff.h
/usr/include/seqan/store/store_io_sam.h
/usr/include/seqan/store/store_io_ucsc.h
/usr/include/seqan/store/store_library.h
/usr/include/seqan/store/store_matepair.h
/usr/include/seqan/store/store_read.h
/usr/include/seqan/stream.h
/usr/include/seqan/stream/file_stream.h
/usr/include/seqan/stream/lexical_cast.h
/usr/include/seqan/stream/stream_base.h
/usr/include/seqan/system.h
/usr/include/seqan/system/file_async.h
/usr/include/seqan/system/file_directory.h
/usr/include/seqan/system/file_forwards.h
/usr/include/seqan/system/file_sync.h
/usr/include/seqan/system/system_base.h
/usr/include/seqan/system/system_forwards.h
/usr/include/seqan/version.h
This bug has been filed against both packages. If you, the maintainers of
the two packages in question, have agreed on which of the packages will
resolve the problem please reassign the bug to that package. You may then
also register in the BTS that the other package is affected by the bug.
-Ralf.
PS: for more information about the detection of file overwrite errors
of this kind see http://qa.debian.org/dose/file-overwrites.html.
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