[Debian-med-packaging] Fwd: Biopython 1.69 released

Sat Apr 8 05:14:06 UTC 2017

Hi Peter,

currently Debian Stretch is frozen and we will not be able to let any
new versions migrate to the next stable.  The freeze policy prohibits
new versions until the new release.  So I guess I will wait about 1-2
monthes with this new version.  Please let me know if you consider it
very important to have 1.69 packaged as soon as possible.  In this case
I'd move it to the experimental branch which is not affected by the
freeze policy.

Kind regards

      Andreas.

On Fri, Apr 07, 2017 at 05:37:26PM +0100, Peter Cock wrote:
> Dear Debian-Med, and Andreas in particular,
> 
> This is to let you know we've released Biopython 1.69, and would
> be grateful if you could update the Debian Biopython packages.
> 
> I'm not aware of any changes which will directly affect the packaging,
> except perhaps that we've adopted the *.rst extension for the text
> files in the root folder.
> 
> Note we have begun dual licensing Biopython - right now just a
> handful of files are explicitly available under both the historic
> “Biopython License Agreement”, and the very similar but more
> commonly used “3-Clause BSD License”.
> 
> As usual, if you do find any other issues, especially from changes
> to the tool we test with, we're happy to get your useful feedback.
> 
> Thank you,
> 
> Peter
> 
> 
> ---------- Forwarded message ----------
> From: Peter Cock <p.j.a.cock at googlemail.com>
> Date: Fri, Apr 7, 2017 at 2:59 PM
> Subject: Biopython 1.69 released
> To: biopython-announce at lists.open-bio.org, Biopython Mailing List
> <biopython at lists.open-bio.org>, Biopython-Dev Mailing List
> <biopython-dev at lists.open-bio.org>
> 
> 
> Dear Biopythoneers,
> 
> Source distributions and Windows installers for Biopython 1.69 are now
> available from the downloads page on the official Biopython website,
> and the release is also on the Python Package Index (PyPI).
> 
> This release of Biopython supports Python 2.7, 3.3, 3.4, 3.5 and 3.6
> (we have now dropped support for Python 2.6). It has also been tested
> on PyPy v5.7, PyPy3.5 v5.7 beta, and Jython 2.7.
> 
> We have started to dual-license Biopython under both our original
> liberal “Biopython License Agreement”, and the very similar but more
> commonly used “3-Clause BSD License”. In this release a small number
> of the Python files are explicitly available under either license, but
> most of the code remains under the “Biopython License Agreement” only.
> See the LICENSE.rst file for more details.
> 
> We now expect and take advantage of NumPy under PyPy, and compile most
> of the Biopython C code modules as well.
> 
> For further details please see the NEWS.rst file, or the announcement blog post:
> 
> https://github.com/biopython/biopython/blob/master/NEWS.rst
> https://news.open-bio.org/2017/04/07/biopython-1-69-released/
> 
> Many thanks to the Biopython developers and community for making this
> release possible, especially the following contributors:
> 
> - Aaron Rosenfeld
> - Adam Kurkiewicz (first contribution)
> - Adam Novak (first contribution)
> - Adrian Altenhoff (first contribution)
> - Allis Tauri (first contribution)
> - Andrew Dalke
> - Andrew Guy (first contribution)
> - Andrew Sczesnak (first contribution)
> - Ben Fulton
> - Bernhard Thiel (first contribution)
> - Bertrand Néron
> - Blaise Li (first contribution)
> - Brandon Carter (first contribution)
> - Brandon Invergo
> - Carlos Pena
> - Carlos Ríos
> - Chris Warth
> - Emmanuel Noutahi
> - Foen Peng (first contribution)
> - Francesco Gastaldello (first contribution)
> - Francisco Pina-Martins (first contribution)
> - Hector Martinez (first contribution)
> - Jacek Śmietański
> - Jack Twilley (first contribution)
> - Jeroen Van Goey (first contribution)
> - Joshua Meyers (first contribution)
> - Kurt Graff (first contribution)
> - Lenna Peterson
> - Leonhard Heizinger (first contribution)
> - Marcin Magnus (first contribution)
> - Markus Piotrowski
> - Maximilian Greil (first contribution)
> - Michał J. Gajda (first contribution)
> - Michiel de Hoon
> - Milind Luthra (first contribution)
> - Oscar G. Garcia (first contribution)
> - Owen Solberg
> - Peter Cock
> - Richard Neher (first contribution)
> - Sebastian Bassi
> - Sourav Singh (first contribution)
> - Spencer Bliven (first contribution)
> - Stefans Mezulis
> - Steve Bond
> - Steve Marshall (first contribution)
> - Uri Laserson
> - Veronika Berman (first contribution)
> - Vincent Davis
> - Wibowo 'Bow' Arindrarto
> 
> Thank you all.
> 
> P.S. You can follow @Biopython on Twitter
> 
> Checksums:
> 
> $ md5sum biopython-1.69.*
> 18ad299569eea79febf4641cce840db0  biopython-1.69.tar.gz
> 1acfa83d7340d82e248261f8344038be  biopython-1.69.win32-py2.7.exe
> ff38a7286b455156619c8c2c4cb45a0e  biopython-1.69.win32-py2.7.msi
> e03809050cd862226299ba4285b25615  biopython-1.69.win32-py3.3.exe
> f8605d2e76e60353c776f69991067e07  biopython-1.69.win32-py3.3.msi
> 6bc7d291b7482f194f66a91d3eb89cb6  biopython-1.69.win32-py3.4.exe
> 0bc8e39ca0c3127b531f1998c91c7233  biopython-1.69.win32-py3.4.msi
> a134c5b8e35d6515ca4f9e663000bcb3  biopython-1.69.zip
> 
> $ shasum -a 256 biopython-1.69.*
> 169ffa90c3d3ec5678c7a5c99501c0cfeb54c40ca51a619ce6cee5026d3403eb
> biopython-1.69.tar.gz
> 6520ac092f52fd35b48d12c5f264d78c4cd20ede841a4755b73376184c1f9c83
> biopython-1.69.win32-py2.7.exe
> 505aa27537f358129d096c1cb5b761108c6200a11483d25ad83188b11089b45c
> biopython-1.69.win32-py2.7.msi
> 11a5a04da0d8830789d53fed7d631f5a8a6d3926869241d212265b7b9889b987
> biopython-1.69.win32-py3.3.exe
> 7e3e764236e29f01fe3b346878801ee9f1166269e4ac557d88201e2f1cd85949
> biopython-1.69.win32-py3.3.msi
> c9ee5594e5f865fbf4871be8661e4be559dcb599c64e7fa4922e55b771aab249
> biopython-1.69.win32-py3.4.exe
> 8426e2b548e594d63bfa7584f39513ee906d2de32037c900af9b6625318e051c
> biopython-1.69.win32-py3.4.msi
> e71ae4c5ba996cbe01002d55d877bf5eafa053c116012d7ace489dfc41959e05
> biopython-1.69.zip
> 
> 32-bit Windows installers for Python 3.5 and 3.6 to follow later.
> 

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