[Debian-med-packaging] Bug#859111: Bug#859111: Bug#859111: ariba: FTBFS: FAIL: Test run_bowtie2 unsorted

[Sascha Steinbiss]

tags 859111 pending
thanks

> bowtie2 2.3.1 introduced different default values for one of the
> parameters [1], it might be likely that it's connected to that. I
> have contacted upstream

Upstream have added support for Bowtie2 2.3.1 [1] and I can confirm that
the tests -- and hence the build -- are fixed using this latest version.
Updated Debian package currently in experimental, will upload to
unstable once the freeze is over.

Cheers
Sascha

[1] https://github.com/sanger-pathogens/ariba/issues/170

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