[Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

[Lucas Nussbaum]

Source: python-pysam
Version: 0.11.2.2+ds-3
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20170805 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<BUILDDIR>>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line 149, in setUp
>     self.check_version()
>   File "/<<BUILDDIR>>/python-pysam-0.11.2.2+ds/tests/samtools_test.py", line 139, in check_version
>     samtools_version))
> ValueError: versions of pysam.samtools and samtools differ: 1.4.1 != 1.5
> 
> ----------------------------------------------------------------------
> Ran 760 tests in 56.829s
> 
> FAILED (SKIP=5, errors=2)
> (0, 0)
> E: pybuild pybuild:283: test: plugin distutils failed with: exit code=1: cd /<<BUILDDIR>>/python-pysam-0.11.2.2+ds/.pybuild/pythonX.Y_2.7/build; python2.7 -m nose 
> dh_auto_test: pybuild --test -i python{version} -p 2.7 returned exit code 13
> debian/rules:39: recipe for target 'override_dh_auto_test' failed

The full build log is available from:
   http://aws-logs.debian.net/2017/08/05/python-pysam_0.11.2.2+ds-3_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.