[Debian-med-packaging] Bug#871098: bppsuite: FTBFS: CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTVN3bpp24ConstantRateDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): undefined reference to `virtual thunk to bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const'

[Lucas Nussbaum]

Source: bppsuite
Version: 2.3.1-3
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20170805 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> /usr/bin/c++  -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion  -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bpppars.dir/bppPars.cpp.o  -o bpppars /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.11.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.7.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.11.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.3.0.0 
> CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTVN3bpp24ConstantRateDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): undefined reference to `virtual thunk to bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const'
> CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTCN3bpp24ConstantRateDistributionE0_NS_20ConstantDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): undefined reference to `virtual thunk to bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const'
> CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTCN3bpp24ConstantRateDistributionE0_NS_28AbstractDiscreteDistributionE[_ZTVN3bpp24ConstantRateDistributionE]+0x278): undefined reference to `virtual thunk to bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const'
> CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o:(.data.rel.ro._ZTCN3bpp24ConstantRateDistributionE144_NS_26AbstractParameterAliasableE[_ZTVN3bpp24ConstantRateDistributionE]+0x2f0): undefined reference to `virtual thunk to bpp::AbstractParameterAliasable::getAliases[abi:cxx11]() const'
> collect2: error: ld returned 1 exit status

The full build log is available from:
   http://aws-logs.debian.net/2017/08/05/bppsuite_2.3.1-3_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.