[Debian-med-packaging] Bug#871130: elastix: FTBFS: vcl_compiler.h:79:4: error: #error "Dunno about this gcc"
Lucas Nussbaum
lucas at debian.org
Sun Aug 6 21:25:20 UTC 2017
Source: elastix
Version: 4.8-12
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20170805 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/MevisDicomTiff && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o -c /<<PKGBUILDDIR>>/src/Common/MevisDicomTiff/itkUseMevisDicomTiff.cxx
> [ 12%] Linking CXX static library ../../bin/libmevisdcmtiff.a
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/MevisDicomTiff && /usr/bin/cmake -P CMakeFiles/mevisdcmtiff.dir/cmake_clean_target.cmake
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/MevisDicomTiff && /usr/bin/cmake -E cmake_link_script CMakeFiles/mevisdcmtiff.dir/link.txt --verbose=1
> /usr/bin/ar qc ../../bin/libmevisdcmtiff.a CMakeFiles/mevisdcmtiff.dir/itkUseMevisDicomTiff.cxx.o
> /usr/bin/ranlib ../../bin/libmevisdcmtiff.a
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 12%] Built target mevisdcmtiff
> In file included from /usr/include/ITK-4.10/vcl_limits.h:5:0,
> from /usr/include/ITK-4.10/itkNumericTraits.h:51,
> from /usr/include/ITK-4.10/itkConceptChecking.h:32,
> from /usr/include/ITK-4.10/itkAtomicInt.h:38,
> from /usr/include/ITK-4.10/itkLightObject.h:25,
> from /usr/include/ITK-4.10/itkObject.h:31,
> from /usr/include/ITK-4.10/itkOptimizer.h:21,
> from /usr/include/ITK-4.10/itkNonLinearOptimizer.h:21,
> from /usr/include/ITK-4.10/itkSingleValuedNonLinearOptimizer.h:21,
> from /<<PKGBUILDDIR>>/src/Common/itkScaledSingleValuedNonLinearOptimizer.h:21,
> from /<<PKGBUILDDIR>>/src/Common/itkScaledSingleValuedNonLinearOptimizer.cxx:22:
> /usr/include/ITK-4.10/vcl_compiler.h:79:4: error: #error "Dunno about this gcc"
> # error "Dunno about this gcc"
> ^~~~~
> In file included from /usr/include/ITK-4.10/vcl_limits.h:5:0,
> from /usr/include/ITK-4.10/itkNumericTraits.h:51,
> from /usr/include/ITK-4.10/itkConceptChecking.h:32,
> from /usr/include/ITK-4.10/itkAtomicInt.h:38,
> from /usr/include/ITK-4.10/itkLightObject.h:25,
> from /usr/include/ITK-4.10/itkObject.h:31,
> from /<<PKGBUILDDIR>>/src/Common/ParameterFileParser/itkParameterFileParser.h:22,
> from /<<PKGBUILDDIR>>/src/Common/ParameterFileParser/itkParameterFileParser.cxx:22:
> /usr/include/ITK-4.10/vcl_compiler.h:79:4: error: #error "Dunno about this gcc"
> # error "Dunno about this gcc"
> ^~~~~
> [ 13%] Building CXX object Common/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/kd_util.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/KNN/ann_1.1 && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -I/usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/ANNlib.dir/src/kd_util.cpp.o -c /<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/src/kd_util.cpp
> [ 14%] Linking CXX static library ../../bin/libxoutlib.a
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/xout && /usr/bin/cmake -P CMakeFiles/xoutlib.dir/cmake_clean_target.cmake
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/xout && /usr/bin/cmake -E cmake_link_script CMakeFiles/xoutlib.dir/link.txt --verbose=1
> /usr/bin/ar qc ../../bin/libxoutlib.a CMakeFiles/xoutlib.dir/xoutmain.cxx.o
> /usr/bin/ranlib ../../bin/libxoutlib.a
> make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 14%] Built target xoutlib
> [ 14%] Building CXX object Common/KNN/ann_1.1/CMakeFiles/ANNlib.dir/src/perf.cpp.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/KNN/ann_1.1 && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -I/usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/src -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/ANNlib.dir/src/perf.cpp.o -c /<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/src/perf.cpp
> [ 15%] Building CXX object Common/CMakeFiles/elxCommon.dir/CostFunctions/itkScaledSingleValuedCostFunction.cxx.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCommon.dir/CostFunctions/itkScaledSingleValuedCostFunction.cxx.o -c /<<PKGBUILDDIR>>/src/Common/CostFunctions/itkScaledSingleValuedCostFunction.cxx
> [ 16%] Building CXX object Common/ParameterFileParser/CMakeFiles/param.dir/itkParameterMapInterface.cxx.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common/ParameterFileParser && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/param.dir/itkParameterMapInterface.cxx.o -c /<<PKGBUILDDIR>>/src/Common/ParameterFileParser/itkParameterMapInterface.cxx
> [ 17%] Building CXX object Common/CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.cxx.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.cxx.o -c /<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.cxx
> [ 17%] Building CXX object Common/CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkLineSearchOptimizer.cxx.o
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/Common && /usr/bin/c++ -DELASTIX_USE_OPENMP -DITK_IO_FACTORY_REGISTER_MANAGER -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/ITKIOFactoryRegistration -I/usr/include/hdf5/serial -I/usr/include/dcmtk/dcmseg -I/usr/include/dcmtk/dcmfg -I/usr/include/dcmtk/dcmiod -I/usr/include/dcmtk/dcmrt -I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmqrdb -I/usr/include/dcmtk/dcmwlm -I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmsr -I/usr/include/dcmtk/dcmnet -I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg -I/usr/include/dcmtk/dcmimage -I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd -I/usr/include/dcmtk/config -I/usr/include/x86_64-linux-gnu -I/usr/include/nifti -I/usr/include/gdcm-2.6 -I/usr/include/double-conversion -isystem /usr/include/ITK-4.10 -I/<<PKGBUILDDIR>>/src/Common -I/<<PKGBUILDDIR>>/src/Common/CostFunctions -I/<<PKGBUILDDIR>>/src/Common/CUDA -I/<<PKGBUILDDIR>>/src/Common/ImageSamplers -I/<<PKGBUILDDIR>>/src/Common/KNN -I/<<PKGBUILDDIR>>/src/Common/KNN/ann_1.1/include -I/<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers -I/<<PKGBUILDDIR>>/src/Common/ParameterFileParser -I/<<PKGBUILDDIR>>/src/Common/Transforms -I/<<PKGBUILDDIR>>/src/Common/xout -I/<<PKGBUILDDIR>>/src/Common/MevisDicomTiff -I/<<PKGBUILDDIR>>/src/Core -I/<<PKGBUILDDIR>>/src/Core/Install -I/<<PKGBUILDDIR>>/src/Core/Kernel -I/<<PKGBUILDDIR>>/src/Core/ComponentBaseClasses -I/<<PKGBUILDDIR>>/src/Core/Configuration -I/<<PKGBUILDDIR>>/src/Core/Main -I/<<PKGBUILDDIR>>/src/Components/FixedImagePyramids -I/<<PKGBUILDDIR>>/src/Components/ImageSamplers -I/<<PKGBUILDDIR>>/src/Components/Interpolators -I/<<PKGBUILDDIR>>/src/Components/Metrics -I/<<PKGBUILDDIR>>/src/Components/MovingImagePyramids -I/<<PKGBUILDDIR>>/src/Components/Optimizers -I/<<PKGBUILDDIR>>/src/Components/Registrations -I/<<PKGBUILDDIR>>/src/Components/ResampleInterpolators -I/<<PKGBUILDDIR>>/src/Components/Resamplers -I/<<PKGBUILDDIR>>/src/Components/Transforms -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -fvisibility=hidden -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -DNDEBUG -o CMakeFiles/elxCommon.dir/LineSearchOptimizers/itkLineSearchOptimizer.cxx.o -c /<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers/itkLineSearchOptimizer.cxx
> In file included from /usr/include/ITK-4.10/vcl_limits.h:5:0,
> from /usr/include/ITK-4.10/itkNumericTraits.h:51,
> from /usr/include/ITK-4.10/itkConceptChecking.h:32,
> from /usr/include/ITK-4.10/itkAtomicInt.h:38,
> from /usr/include/ITK-4.10/itkLightObject.h:25,
> from /usr/include/ITK-4.10/itkObject.h:31,
> from /usr/include/ITK-4.10/itkCostFunction.h:21,
> from /usr/include/ITK-4.10/itkSingleValuedCostFunction.h:21,
> from /<<PKGBUILDDIR>>/src/Common/CostFunctions/itkScaledSingleValuedCostFunction.h:22,
> from /<<PKGBUILDDIR>>/src/Common/CostFunctions/itkScaledSingleValuedCostFunction.cxx:22:
> /usr/include/ITK-4.10/vcl_compiler.h:79:4: error: #error "Dunno about this gcc"
> # error "Dunno about this gcc"
> ^~~~~
> In file included from /usr/include/ITK-4.10/vcl_limits.h:5:0,
> from /usr/include/ITK-4.10/itkNumericTraits.h:51,
> from /usr/include/ITK-4.10/itkConceptChecking.h:32,
> from /usr/include/ITK-4.10/itkAtomicInt.h:38,
> from /usr/include/ITK-4.10/itkLightObject.h:25,
> from /usr/include/ITK-4.10/itkObject.h:31,
> from /<<PKGBUILDDIR>>/src/Common/ParameterFileParser/itkParameterMapInterface.h:22,
> from /<<PKGBUILDDIR>>/src/Common/ParameterFileParser/itkParameterMapInterface.cxx:19:
> /usr/include/ITK-4.10/vcl_compiler.h:79:4: error: #error "Dunno about this gcc"
> # error "Dunno about this gcc"
> ^~~~~
> In file included from /usr/include/ITK-4.10/vcl_limits.h:5:0,
> from /usr/include/ITK-4.10/itkNumericTraits.h:51,
> from /usr/include/ITK-4.10/itkConceptChecking.h:32,
> from /usr/include/ITK-4.10/itkAtomicInt.h:38,
> from /usr/include/ITK-4.10/itkLightObject.h:25,
> from /usr/include/ITK-4.10/itkObject.h:31,
> from /usr/include/ITK-4.10/itkOptimizer.h:21,
> from /usr/include/ITK-4.10/itkNonLinearOptimizer.h:21,
> from /usr/include/ITK-4.10/itkSingleValuedNonLinearOptimizer.h:21,
> from /<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers/itkLineSearchOptimizer.h:22,
> from /<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.h:22,
> from /<<PKGBUILDDIR>>/src/Common/LineSearchOptimizers/itkMoreThuenteLineSearchOptimizer.cxx:22:
> /usr/include/ITK-4.10/vcl_compiler.h:79:4: error: #error "Dunno about this gcc"
> # error "Dunno about this gcc"
> ^~~~~
> Common/CMakeFiles/elxCommon.dir/build.make:65: recipe for target 'Common/CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o' failed
> make[3]: *** [Common/CMakeFiles/elxCommon.dir/itkScaledSingleValuedNonLinearOptimizer.cxx.o] Error 1
The full build log is available from:
http://aws-logs.debian.net/2017/08/05/elastix_4.8-12_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
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