[Debian-med-packaging] Bug#864376: falcon: properly fix test failure: Task Node(1-preads_ovl/m_00001) failed with exit-code=256

[Andreas Tille]

Hi Afif,

there is a new upstream version which I intended to give a chance
whether this issue might be fixed.  Unfortunately the get-orig-source
script fails - somehow the submodules are not cloned properly.

Before I'll dive into this, could you please have a look?

Thank you

      Andreas.

On Wed, Jun 07, 2017 at 09:03:50PM +0300, Adrian Bunk wrote:
> Source: falcon
> Version: 1.8.4-1
> Severity: important
> 
> https://lists.debian.org/debian-med/2017/01/msg00085.html
> and #863929 show the following test failure that sometimes
> occurred and caused FTBFS:
> 
> ...
> 2017-06-01 17:56:51,631[ERROR] Task Node(0-rawreads/job_0001) failed with exit-code=256
> 2017-06-01 17:56:51,631[ERROR] Task Node(0-rawreads/job_0000) failed with exit-code=256
> 2017-06-01 17:56:51,632[INFO] recently_satisfied: set([])
> 2017-06-01 17:56:51,632[INFO] Num satisfied in this iteration: 0
> 2017-06-01 17:56:51,632[INFO] Num still unsatisfied: 3
> 2017-06-01 17:56:51,632[ERROR] Some tasks are recently_done but not satisfied: set([Node(0-rawreads/job_0000), Node(0-rawreads/job_0001)])
> 2017-06-01 17:56:51,632[ERROR] ready: set([])
> submitted: set([])
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/inst/bin/fc_run.py", line 4, in <module>
>     __import__('pkg_resources').run_script('falcon-kit==0.7', 'fc_run.py')
>   File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 739, in run_script
>     self.require(requires)[0].run_script(script_name, ns)
>   File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 1494, in run_script
>     exec(code, namespace, namespace)
>   File "/<<PKGBUILDDIR>>/inst/pylib/falcon_kit-0.7-py2.7-linux-i686.egg/EGG-INFO/scripts/fc_run.py", line 5, in <module>
>     main(sys.argv)
>   File "/<<PKGBUILDDIR>>/inst/pylib/falcon_kit-0.7-py2.7-linux-i686.egg/falcon_kit/mains/run1.py", line 461, in main
>     main1(argv[0], args.config, args.logger)
>   File "/<<PKGBUILDDIR>>/inst/pylib/falcon_kit-0.7-py2.7-linux-i686.egg/falcon_kit/mains/run1.py", line 136, in main1
>     input_fofn_plf=input_fofn_plf,
>   File "/<<PKGBUILDDIR>>/inst/pylib/falcon_kit-0.7-py2.7-linux-i686.egg/falcon_kit/mains/run1.py", line 234, in run
>     wf.refreshTargets(exitOnFailure=exitOnFailure)
>   File "/<<PKGBUILDDIR>>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 226, in refreshTargets
>     self._refreshTargets(updateFreq, exitOnFailure)
>   File "/<<PKGBUILDDIR>>/inst/pylib/pypeflow-1.0.0-py2.7.egg/pypeflow/simple_pwatcher_bridge.py", line 297, in _refreshTargets
>     failures, len(unsatg)))
> Exception: We had 2 failures. 3 tasks remain unsatisfied.
> makefile:4: recipe for target 'run-synth0' failed
> make[5]: *** [run-synth0] Error 1
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/FALCON-examples'
> 
> 
> The workaround in 1.8.6-1.1 was to disable integration-tests,
> but they should be re-enabled and the issue properly fixed.
> 
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