[Debian-med-packaging] Bug#884215: salmon FTBFS with libspdlog-dev 1:0.14.0-1
Adrian Bunk
bunk at debian.org
Tue Dec 12 18:34:03 UTC 2017
Source: salmon
Version: 0.7.2+ds1-2
Severity: serious
Tags: buster sid
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/salmon.html
...
In file included from /usr/include/eigen3/Eigen/Core:421:0,
from /usr/include/eigen3/Eigen/Dense:1,
from /build/1st/salmon-0.7.2+ds1/include/GCFragModel.hpp:6,
from /build/1st/salmon-0.7.2+ds1/include/Transcript.hpp:8,
from /build/1st/salmon-0.7.2+ds1/src/DistributionUtils.cpp:3:
/usr/include/eigen3/Eigen/src/Core/AssignEvaluator.h:90:50: warning: enum constant in boolean context [-Wint-in-bool-context]
MaySliceVectorize = bool(MightVectorize) && bool(DstHasDirectAccess)
^~~~~~~~~~~~~~~~~~~~~~~~
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp: In function 'bool salmon::utils::processQuantOptions(SalmonOpts&, boost::program_options::variables_map&, int32_t)':
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1348:69: error: no matching function for call to 'make_shared<template<class Mutex> class spdlog::sinks::ansicolor_sink>(std::shared_ptr<spdlog::sinks::stdout_sink<std::mutex> >&)'
std::make_shared<spdlog::sinks::ansicolor_sink>(rawConsoleSink);
^
In file included from /usr/include/c++/7/memory:81:0,
from /usr/include/boost/config/no_tr1/memory.hpp:21,
from /usr/include/boost/smart_ptr/shared_ptr.hpp:23,
from /usr/include/boost/shared_ptr.hpp:17,
from /usr/include/boost/filesystem/path.hpp:29,
from /usr/include/boost/filesystem.hpp:16,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:2:
/usr/include/c++/7/bits/shared_ptr.h:703:5: note: candidate: template<class _Tp, class ... _Args> std::shared_ptr<_Tp> std::make_shared(_Args&& ...)
make_shared(_Args&&... __args)
^~~~~~~~~~~
/usr/include/c++/7/bits/shared_ptr.h:703:5: note: template argument deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1349:62: error: no matching function for call to 'create(const char [10], <brace-enclosed initializer list>)'
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
In file included from /usr/include/spdlog/spdlog.h:189:0,
from /build/1st/salmon-0.7.2+ds1/include/SalmonOpts.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/SalmonUtils.hpp:25,
from /build/1st/salmon-0.7.2+ds1/include/UtilityFunctions.hpp:5,
from /build/1st/salmon-0.7.2+ds1/include/SBModel.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/AlignmentLibrary.hpp:14,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:17:
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: candidate: std::shared_ptr<spdlog::logger> spdlog::create(const string&, const sink_ptr&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, const spdlog::sink_ptr& sink)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: no known conversion for argument 2 from '<brace-enclosed initializer list>' to 'const sink_ptr& {aka const std::shared_ptr<spdlog::sinks::sink>&}'
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: candidate: std::shared_ptr<spdlog::logger> spdlog::create(const string&, spdlog::sinks_init_list)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, spdlog::sinks_init_list sinks)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: no known conversion for argument 2 from '<brace-enclosed initializer list>' to 'spdlog::sinks_init_list {aka std::initializer_list<std::shared_ptr<spdlog::sinks::sink> >}'
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: candidate: template<class It> std::shared_ptr<spdlog::logger> spdlog::create(const string&, const It&, const It&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, const It& sinks_begin, const It& sinks_end)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: template argument deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1349:62: note: candidate expects 3 arguments, 2 provided
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
In file included from /usr/include/spdlog/spdlog.h:189:0,
from /build/1st/salmon-0.7.2+ds1/include/SalmonOpts.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/SalmonUtils.hpp:25,
from /build/1st/salmon-0.7.2+ds1/include/UtilityFunctions.hpp:5,
from /build/1st/salmon-0.7.2+ds1/include/SBModel.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/AlignmentLibrary.hpp:14,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:17:
/usr/include/spdlog/details/spdlog_impl.h:193:40: note: candidate: template<class Sink, class ... Args> std::shared_ptr<spdlog::logger> spdlog::create(const string&, Args ...)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, Args... args)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:193:40: note: template argument deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1349:62: note: couldn't deduce template parameter 'Sink'
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
^
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1351:69: error: no matching function for call to 'create(const char [9], <brace-enclosed initializer list>)'
auto jointLog = spdlog::create("jointLog", {fileSink, consoleSink});
^
In file included from /usr/include/spdlog/spdlog.h:189:0,
from /build/1st/salmon-0.7.2+ds1/include/SalmonOpts.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/SalmonUtils.hpp:25,
from /build/1st/salmon-0.7.2+ds1/include/UtilityFunctions.hpp:5,
from /build/1st/salmon-0.7.2+ds1/include/SBModel.hpp:7,
from /build/1st/salmon-0.7.2+ds1/include/AlignmentLibrary.hpp:14,
from /build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:17:
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: candidate: std::shared_ptr<spdlog::logger> spdlog::create(const string&, const sink_ptr&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, const spdlog::sink_ptr& sink)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:179:40: note: no known conversion for argument 2 from '<brace-enclosed initializer list>' to 'const sink_ptr& {aka const std::shared_ptr<spdlog::sinks::sink>&}'
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: candidate: std::shared_ptr<spdlog::logger> spdlog::create(const string&, spdlog::sinks_init_list)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, spdlog::sinks_init_list sinks)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:186:40: note: no known conversion for argument 2 from '<brace-enclosed initializer list>' to 'spdlog::sinks_init_list {aka std::initializer_list<std::shared_ptr<spdlog::sinks::sink> >}'
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: candidate: template<class It> std::shared_ptr<spdlog::logger> spdlog::create(const string&, const It&, const It&)
inline std::shared_ptr<spdlog::logger> spdlog::create(const std::string& logger_name, const It& sinks_begin, const It& sinks_end)
^~~~~~
/usr/include/spdlog/details/spdlog_impl.h:201:40: note: template argument deduction/substitution failed:
/build/1st/salmon-0.7.2+ds1/src/SalmonUtils.cpp:1351:69: note: candidate expects 3 arguments, 2 provided
auto jointLog = spdlog::create("jointLog", {fileSink, consoleSink});
^
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