[Debian-med-packaging] Bug#854837: Package dicompyler does not work

Sun Feb 12 21:42:13 UTC 2017

I guess that after we fix this problem the next problem to fix will be that
one that is described in the post

http://stackoverflow.com/questions/5374451/importerror-cannot-import-name-publisher

At that point I was not able to proceed further since I am not kinda Python
guy:)
Vojtech

2017-02-12 22:30 GMT+01:00 Vojtech Kulvait <kulvait at gmail.com>:

> Hi,
> the package you provided to me does not work either. It shows main
> application dialog but when I click on Open patient button it does not open
> dialog but in console there is
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> *ERROR: Unhandled exception: Traceback (most recent call last):  File
> "/usr/share/dicompyler/dicompyler/main.py", line 314, in OnOpenPatient
> dicomgui.ImportDicom(self)  File
> "/usr/share/dicompyler/dicompyler/dicomgui.py", line 31, in ImportDicom
> dlgDicomImporter.Init(res)  File
> "/usr/share/dicompyler/dicompyler/dicomgui.py", line 129, in Init
> self.OnDirectorySearch()  File
> "/usr/share/dicompyler/dicompyler/dicomgui.py", line 188, in
> OnDirectorySearch    args=(self, self.path,
> self.import_search_subfolders,AttributeError: 'DicomImporterDialog' object
> has no attribute 'path'*
> Which is the same behavior as when I solved that matplotlib problem by
> editing that file.
>
> I was lucky enough to run windows version today. I was able to view ct
> data and radiotherapy data and doses data. It seems in the package you
> provided to me there is even no button for importing these data and import
> dialog is gray.
> Vojtech.
>
>
> 2017-02-12 15:46 GMT+01:00 Andreas Tille <tille at debian.org>:
>
>> Hi Vojtech,
>>
>> please make sure you send your mails to 854837 at bugs.debian.org and not
>> my private e-mail address.  Thanks.
>>
>> On Sun, Feb 12, 2017 at 08:50:05AM +0000, Vojtech Kulvait wrote:
>> > Andreas,
>> > I am using Debian Jessie and you are using some development version.
>>
>> I admit that is true and I assumed that the egg-info files would have
>> been cleaned up also by previous python helper versions.  Sorry for
>> the confusion.
>>
>> > In the
>> > package http://http.debian.net/debian/pool/main/d/dicompyler/
>> > dicompyler_0.4.2.orig.tar.gz there is file
>> > dicompyler/dicompyler-0.4.2.egg-info/requires.txt
>>
>> To be clear about this:  Inside the .orig.tar.gz tarball you will find
>> the orginal source as the authors of dicompyler.  As I said its
>> unmaintained and orphaned code which will probably never change.
>> However, at least in *recent* build tools the egg-info files are cleaned
>> up.
>>
>> > in the format I have described with those dependencieds. To replicate
>> the
>> > problem I downloaded live CD with debian Jessie (XFCE).
>> >
>> > Using vanilla Debian Live CD:
>> > apt-get install dicompyler
>> > dicompyler
>> > The result is:
>> >
>> > *Traceback (most recent call last):  File "/usr/bin/dicompyler", line
>> 5, in
>> > <module>    from pkg_resources import load_entry_point  File
>> > "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2876, in
>> > <module>    working_set = WorkingSet._build_master()  File
>> > "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 451, in
>> > _build_master    return cls._build_from_requirements(__requires__)
>> File
>> > "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 464, in
>> > _build_from_requirements    dists = ws.resolve(reqs, Environment())
>> File
>> > "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 639, in
>> > resolve    raise
>> > DistributionNotFound(req)pkg_resources.DistributionNotFound:
>> > matplotlib>=0.99,<=1.3.1*
>> >
>> >
>> > So the problem is that in Jessie is packaged software that does crash
>> after
>> > it is launched.
>>
>> I admit that's bad.  I remember that we did quite some effort to port it
>> to wxpython3.0 and at this time it was running.  Most probably some past
>> version bump of matplotlib spoiled this effort and the package was not
>> tested afterwards again since this is a very rarely used program (it has
>> currently a popularity contest vote of 2 users).
>>
>> > Result of reportbug dicompyler:
>> >
>> > Subject: dicompyler: Dicompyler crashes after launch even from vanilla
>> > Debian Jessie installation.
>> > Package: dicompyler
>> > Version: 0.4.2-2
>> > Severity: important
>>
>> I admit I do not have a Jessie system currently at hand but you might
>> like to try
>>
>>     wget http://ftp.debian.org/debian/pool/main/d/dicompyler/dicompyl
>> er_0.4.2-3_all.deb
>>     sudo dpkg -i dicompyler_0.4.2-3_all.deb
>>
>> This package will be part of the next stable release Stretch and you
>> might be lucky that it also works on Jessie (sorry, I do not have any
>> Jessie system with GUI at hand but it seems it should be at least
>> installable.)
>>
>> Kind regards
>>
>>       Andreas.
>>
>> > -- System Information:
>> > Debian Release: 8.7
>> >   APT prefers stable
>> >   APT policy: (500, 'stable')
>> > Architecture: amd64 (x86_64)
>> >
>> > Kernel: Linux 3.16.0-4-amd64 (SMP w/4 CPU cores)
>> > Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
>> > Shell: /bin/sh linked to /bin/dash
>> > Init: systemd (via /run/systemd/system)
>> >
>> > Versions of packages dicompyler depends on:
>> > ii  python-dicom       0.9.8-1
>> > ii  python-imaging     2.6.1-2+deb8u3
>> > ii  python-matplotlib  1.4.2-3.1
>> > ii  python-numpy       1:1.8.2-2
>> > ii  python-pil         2.6.1-2+deb8u3
>> > ii  python-tornado     3.2.2-1.1
>> > ii  python-wxgtk3.0    3.0.1.1+dfsg-2
>> > pn  python:any         <none>
>> >
>> > Vojtech.
>> >
>> >
>> > 2017-02-11 23:31 GMT+00:00 Andreas Tille <tille at debian.org>:
>> >
>> > > Hi again,
>> > >
>> > > I need to admit we *really* need full system information to deal
>> > > with your bug report.
>> > >
>> > > On Sat, Feb 11, 2017 at 11:09:59PM +0100, Vojtech Kulvait wrote:
>> > > > Hi,
>> > > > well in the file
>> > > > /usr/share/dicompyler/dicompyler-0.4.2.egg-info/requires.txt
>> > > > matplotlib>=0.99, <=1.1.0
>> > > > numpy>=1.2.1
>> > > > pil>=1.1.7
>> > > > pydicom>=0.9.5, <0.9.7
>> > >
>> > > On my system I get:
>> > >
>> > >  $ LC_ALL=C apt-cache policy dicompyler
>> > > dicompyler:
>> > >   Installed: 0.4.2-3
>> > >   Candidate: 0.4.2-3
>> > >   Version table:
>> > >  *** 0.4.2-3 501
>> > >         501 http://httpredir.debian.org/debian testing/main amd64
>> Packages
>> > >          50 http://httpredir.debian.org/debian unstable/main amd64
>> > > Packages
>> > >         100 /var/lib/dpkg/status
>> > >
>> > > $ cat /usr/share/dicompyler/dicompyler-0.4.2.egg-info/requires.txt
>> > > $
>> > >
>> > > So the file you wrote above is in the Debian package empty (=has zero
>> > > bytes).  I'm afraid you are using something else than the Debian
>> > > packaged version.  I can confirm that the original tarball contains
>> the
>> > > data you fixed but you most probably are lacking all the patches that
>> > > are contained in the Debian package.
>> > >
>> > > > i had to edit it to be
>> > > > matplotlib>=0.99, <=1.3.1
>> > >
>> > > That's definitely not needed.
>> > >
>> > > > because otherwise python warns that the version of matplotlib is
>> too new
>> > > > and can not run dicompyler
>> > > >
>> > > > after this bugfix however dicompiler itself draw its widget but you
>> can
>> > > not
>> > > > import data or even open some dialogs, file import is grey. So the
>> > > program
>> > > > is useless.
>> > >
>> > > Whatever you have installed might be useless since upstream seems to
>> > > have orphaned this code and Debian is covering lots of patches to fix
>> > > it.  If you really install the Debian package you can report bugs
>> about
>> > > the package but I have not idea how to fix your manual installation.
>> > >
>> > > > I have to download windows version and then work on it.
>> > >
>> > > Alternatively remove your installation and try
>> > >
>> > >     apt-get install dicompyler
>> > >
>> > > If you confirm you did so and there might be any remaining problems
>> feel
>> > > free to report these here.  If not I probably need to close this bug
>> > > report since it does not concern the Debian package but something else
>> > > we do not control.
>> > >
>> > > Hope this helps
>> > >
>> > >        Andreas.
>> > >
>> > > --
>> > > http://fam-tille.de
>> > >
>>
>> --
>> http://fam-tille.de
>>
>
>
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