[Debian-med-packaging] Bug#868919: physamp: FTBFS: AlignmentOptimizer.cpp:39:32: fatal error: Bpp/Seq/Alphabet.all: No such file or directory

[Andreas Tille]

Hi Julien,

I guess this issue is connected to our latest changes in the library
packages.

Kind regards

        Andreas.

On Wed, Jul 19, 2017 at 05:52:18PM +0200, Lucas Nussbaum wrote:
> Source: physamp
> Version: 0.2.0-1
> Severity: serious
> Tags: buster sid
> User: debian-qa at lists.debian.org
> Usertags: qa-ftbfs-20170719 qa-ftbfs
> Justification: FTBFS on amd64
> 
> Hi,
> 
> During a rebuild of all packages in sid, your package failed to build on
> amd64.
> 
> Relevant part (hopefully):
> > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/physamp && /usr/bin/c++     -Wall -Weffc++ -Wshadow -Wconversion   -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /<<PKGBUILDDIR>>/physamp/AlignmentOptimizer.cpp
> > /<<PKGBUILDDIR>>/physamp/AlignmentOptimizer.cpp:39:32: fatal error: Bpp/Seq/Alphabet.all: No such file or directory
> >  #include <Bpp/Seq/Alphabet.all>
> >                                 ^
> > compilation terminated.
> > physamp/CMakeFiles/bppalnoptim.dir/build.make:65: recipe for target 'physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o' failed
> > make[3]: *** [physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o] Error 1
> 
> The full build log is available from:
>    http://aws-logs.debian.net/2017/07/19/physamp_0.2.0-1_unstable.log
> 
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
> 
> About the archive rebuild: The rebuild was done on EC2 VM instances from
> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
> failed build was retried once to eliminate random failures.
> 
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> 

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