[Debian-med-packaging] Bug#868958: Bug#868958: bcftools FTBFS on 32bit: test failures

[Graham Inggs]

On 19/07/2017 23:12, Adrian Bunk wrote:
> test_vcf_query:
> 	/<<PKGBUILDDIR>>/bcftools view -Ob /tmp/f0hqBlggDJ/view.filter.vcf.gz | /<<PKGBUILDDIR>>/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
> *** Error in `/<<PKGBUILDDIR>>/bcftools': free(): invalid next size (fast): 0x80abd7a0 ***
> /bin/bash: line 1: 11930 Done                    /<<PKGBUILDDIR>>/bcftools view -Ob /tmp/f0hqBlggDJ/view.filter.vcf.gz
>       11931 Aborted                 | /<<PKGBUILDDIR>>/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4'
> 
> 	Non-zero status 134
> .. failed ...
> ...

The crash in test_vcf_query is already fixed upstream in the following 
commit:

https://github.com/samtools/bcftools/commit/8bfb9d5a94aaab4617bc38cfefa8332729dbd837#diff-f200ee7e516d3b752a03f395b72c8cd5


The two test_vcf_norm failures are caused by the following differing 
output on 32-bit architectures:

--- test/norm.out
+++ test/norm.out.new
@@ -55,4 +55,5 @@
  3      17      .       CA      C       999     PASS    INDEL;AN=0 
GT:DP   ./.:0   ./.:0
  4      25      .       T       TT,*    999     PASS    INDEL;AN=0 
GT:DP   ./.:0   ./.:0
  4      36      .       TC      C,TT,TTC        999     PASS 
INDEL;AN=0      GT:DP   ./.:0   ./.:0
+4      37      .       C       I       999     PASS    INDEL;AN=0 
GT:DP   ./.:0   ./.:0
  5      21      .       A       AAG     999     PASS    INDEL;AN=0 
GT:DP   ./.:0   ./.:0