[Debian-med-packaging] Bug#865006: bcftools FTBFS with htslib 1.4.1-2: [E::hts_idx_push] Region 536870912..536870913 cannot be stored in a tbi index. Try using a csi index with min_shift = 14, n_lvls >= 6

[Adrian Bunk]

Source: bcftools
Version: 1.3.1-1
Severity: serious
Tags: buster sid

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/bcftools.html
https://buildd.debian.org/status/fetch.php?pkg=bcftools&arch=mips&ver=1.3.1-1&stamp=1497794613&raw=0

...
test_tabix:
	/build/1st/bcftools-1.3.1/bcftools view -H /tmp/nSKFihjHTO/merge.a.bcf 1:3000151-3000151
.. ok

[E::hts_idx_push] Region 536870912..536870913 cannot be stored in a tbi index. Try using a csi index with min_shift = 14, n_lvls >= 6
tbx_index_build failed: /tmp/nSKFihjHTO/large_chrom_tbi_limit.vcf.gz
The command failed: /usr/bin/tabix -f -p vcf /tmp/nSKFihjHTO/large_chrom_tbi_limit.vcf.gz
 at ./test/test.pl line 259.
	main::error("The command failed: /usr/bin/tabix -f -p vcf /tmp/nSKFihjHTO/"..., "") called at ./test/test.pl line 315
	main::cmd("/usr/bin/tabix -f -p vcf /tmp/nSKFihjHTO/large_chrom_tbi_limi"...) called at ./test/test.pl line 406
	main::bgzip_tabix(HASH(0x564bf0d26f48), "file", "large_chrom_tbi_limit", "suffix", "vcf", "args", "-p vcf") called at ./test/test.pl line 414
	main::bgzip_tabix_vcf(HASH(0x564bf0d26f48), "large_chrom_tbi_limit") called at ./test/test.pl line 423
	main::test_tabix(HASH(0x564bf0d26f48), "in", "large_chrom_tbi_limit", "reg", "chr11:1-536870912", "out", "large_chrom_tbi_limit.20.1.536870912.out") called at ./test/test.pl line 39
Makefile:102: recipe for target 'test' failed
make[1]: *** [test] Error 1
make[1]: Leaving directory '/build/1st/bcftools-1.3.1'
dh_auto_test: make -j16 test returned exit code 2
debian/rules:11: recipe for target 'build' failed
make: *** [build] Error 2