[Debian-med-packaging] Bug#865008: samtools FTBFS with htslib 1.4.1-2: error: conflicting types for 'errmod_t'

Adrian Bunk bunk at debian.org
Sun Jun 18 16:45:18 UTC 2017


Source: samtools
Version: 1.3.1-3
Severity: serious
Tags: buster sid

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/samtools.html
https://buildd.debian.org/status/fetch.php?pkg=samtools&arch=mips&ver=1.3.1-3&stamp=1497794431&raw=0

...
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -I.    -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bam2bcf_indel.o bam2bcf_indel.c
In file included from bam2bcf.h:31:0,
                 from bam2bcf_indel.c:32:
errmod.h:36:3: error: conflicting types for 'errmod_t'
 } errmod_t;
   ^~~~~~~~
In file included from /usr/include/htslib/sam.h:31:0,
                 from bam2bcf_indel.c:31:
/usr/include/htslib/hts.h:659:25: note: previous declaration of 'errmod_t' was here
 typedef struct errmod_t errmod_t;
                         ^~~~~~~~
...



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