[Debian-med-packaging] Bug#865552: libbpp-phyl FTBFS with test failures

[Julien Yann Dutheil]

Dear Andreas, Adrian,

This is most strange indeed. The errors are all "time out" errors on unit
tests which take the longest time (several min or so). Looks like some
issues with the default value for the timeout setting in CTest... I would
suggest to simply skip the unit tests by running "cmake
-DBUILD_TESTING=FALSE ." .  Does this solve the problem?

Best regards,

Julien.

On Fri, Jun 23, 2017 at 1:38 PM, Andreas Tille <tille at debian.org> wrote:

> Hi Adrian,
>
> thanks a lot for your continuous QA effort (I have the feeling that 90%
> of the Debian Med bugs were issued by you ;-) ).
>
> Julien, do you have some explanation for the issue?  I made sure that
> cmake files were found also on i386 so the issue now concerns
>    Version: 2.3.1-3
> but bpp-phyl seems to have issues for non-Intel architectures which
> should be dealt by upstream.  I admit that I have not checked version
> 2.3.1-1 but according to Git the diff is
>
>
> $ git diff debian/2.3.1-1..debian/2.3.1-2
> diff --git a/debian/changelog b/debian/changelog
> index 0bfd365..28fd024 100644
> --- a/debian/changelog
> +++ b/debian/changelog
> @@ -1,3 +1,9 @@
> +libbpp-phyl (2.3.1-2) unstable; urgency=medium
> +
> +  * Make sure cmake files will be installed also on i386
> +
> + -- Andreas Tille <tille at debian.org>  Thu, 22 Jun 2017 08:03:24 +0200
> +
>  libbpp-phyl (2.3.1-1) unstable; urgency=medium
>
>    * New upstream version
> diff --git a/debian/rules b/debian/rules
> index 9d1fe92..3a46afc 100755
> --- a/debian/rules
> +++ b/debian/rules
> @@ -15,5 +15,5 @@ override_dh_install:
>                     --override 's/libbpp-\([-a-z]\+\)[0-9]\+-dev/libbpp-\1-dev/'
> \
>                     --exclude-la \
>                      --movedev debian/tmp/usr/include/* usr/include \
> -                    --movedev debian/tmp/usr/lib/$(DEB_HOST_GNU_TYPE)/cmake
> usr/lib/$(DEB_HOST_GNU_TYPE) \
> +                    --movedev debian/tmp/usr/lib/*/cmake
> usr/lib/$(DEB_HOST_GNU_TYPE) \
>                      debian/tmp/usr/lib/*/*.so
>
>
> So I can not see any explanation for the test failures since the test is
> run before dh_install anyway.  I suspect some deeper issue here.
>
> Kind regards
>
>       Andreas.
>
> On Thu, Jun 22, 2017 at 08:13:02PM +0300, Adrian Bunk wrote:
> > Source: libbpp-phyl
> > Version: 2.3.1-2
> > Severity: serious
> >
> > https://buildd.debian.org/status/package.php?p=libbpp-phyl&suite=sid
> >
> > I do not see any obvious reason why 2.3.1-2 fails on so many
> > architectures where 2.3.1-1 built just a few hours earlier.
>
> --
> http://fam-tille.de
>



-- 
Julien Y. Dutheil, Ph-D
0 (+49) 6421 178 986

§ Max Planck Institute for Evolutionary Biology
Molecular Systems Evolution
Department of Evolutionary Genetics
Plön -- GERMANY

§ Institute of Evolutionary Sciences - Montpellier
University of Montpellier 2 -- FRANCE
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.alioth.debian.org/pipermail/debian-med-packaging/attachments/20170623/f7faaf96/attachment.html>