[Debian-med-packaging] Bug#856597: ITP: python-biotools -- Python bioinformatics utilities for high-throughput genomic sequencing
Andreas Tille
tille at debian.org
Thu Mar 2 19:13:35 UTC 2017
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : python-biotools
Version : 1.2.12
Upstream Author : Andrew Kassen <atkassen at gmail.com>
* URL : https://github.com/sonwell/biotools
* License : BSD
Programming Lang: Python
Description : Python bioinformatics utilities for high-throughput genomic sequencing
This package contains utilities like
biotools.align - align sequences (hybrid between Needleman-Wunsch and
Smith-Waterman which is used to find the subsequence
within a larger sequence that best aligns to a reference)
biotools.annotation - create annotation files. The annotations can be used
to create a hierarchy among the annotations
biotools.BLAST - manage BLAST databases and interface with the BLAST+
standalone program available from NCBI.
biotools.clustal - interface to clustalw global (multiple nucleotide or
peptide sequence alignment)
biotools.complement - creates the complement of a sequence, which can then be
reversed
biotools.sequence - various tools to deal with sequences
biotools.translate - translate a nucleotide using the standard genetic code
Remark: This package is maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/python-biotools.git
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