[Debian-med-packaging] Bug#857283: arb-common: broken symlinks: /usr/lib/arb/bin/mafft-*, /etc/arb/inputMasks/format.readme

Pruesse, Elmar A2 ELMAR.PRUESSE at UCDENVER.EDU
Mon Mar 13 22:52:50 UTC 2017


Hi, 

FYI: you can disable building those by passing "MAFFTLINKS=" as argument to make (overrides the variable containing the targets with empty string), or patching bin/Makefile accordingly.

Elmar

> On Mar 9, 2017, at 7:38 AM, Andreas Beckmann <anbe at debian.org> wrote:
> 
> Package: arb-common
> Version: 6.0.6-1
> Severity: normal
> User: debian-qa at lists.debian.org
> Usertags: piuparts
> 
> Hi,
> 
> during a test with piuparts I noticed your package ships (or creates)
> a broken symlink.
> 
>> From the attached log (scroll to the bottom...):
> 
> 2m1.8s ERROR: FAIL: Broken symlinks:
>  /usr/lib/arb/bin/mafft-xinsi -> mafft
>  /usr/lib/arb/bin/mafft-qinsi -> mafft
>  /usr/lib/arb/bin/mafft-nwnsi -> mafft
>  /usr/lib/arb/bin/mafft-nwns -> mafft
>  /usr/lib/arb/bin/mafft-linsi -> mafft
>  /usr/lib/arb/bin/mafft-ginsi -> mafft
>  /usr/lib/arb/bin/mafft-fftnsi -> mafft
>  /usr/lib/arb/bin/mafft-fftns -> mafft
>  /usr/lib/arb/bin/mafft-einsi -> mafft
>  /etc/arb/inputMasks/format.readme -> ../help/input_mask_format.hlp
> 
> There is /usr/lib/arb/lib/help/input_mask_format.hlp ...
> 
> 
> cheers,
> 
> Andreas
> <arb-common_6.0.6-1.log.gz>



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