[Debian-med-packaging] Unexpanded @PKGNAME@ macros in path names of r-bioc-biobase and r-bioc-makecdfenv?

[Dirk Eddelbuettel]

On 23 March 2017 at 23:27, Axel Beckert wrote:
| Hi,
| 
| after having stumbled upon #858567 and #857795 (files under
| /usr/@DATADIRNAME@/ — literally) I wondered if there are similar cases
| with different variable names in Debian. Using "apt-file search NAME@"
| I found two more similar cases, just deeper down the in the file
| hierachy and probably only causing broken packages, but no
| FHS violation:
| 
| r-bioc-biobase: /usr/lib/R/site-library/Biobase/Code/R/get at PKGNAME@.R
| r-bioc-biobase: /usr/lib/R/site-library/Biobase/Code/man/@PKGNAME at .Rd
| r-bioc-biobase: /usr/lib/R/site-library/Biobase/Code/man/get at PKGNAME@.Rd
| r-bioc-biobase: /usr/lib/R/site-library/Biobase/ExpressionSet/man/@PKGNAME at .Rd
| r-bioc-makecdfenv: /usr/lib/R/site-library/makecdfenv/Code/man/@DIMENVNAME at .Rd
| r-bioc-makecdfenv: /usr/lib/R/site-library/makecdfenv/Code/man/@PKGNAME at .Rd
| 
| Since I have no idea how R works, I'm not sure if these are bugs at
| all or if this is intended. But since I haven't found any other R
| package with such weird file names, I suspect that these are bugs.

Recursive search in the actual R package sources brings up nada:

  edd at max:~$ ag PKGNAME src/debian/R/R-3.3.3/
  edd at max:~$ ag "@PKGNAME@" src/debian/R/R-3.3.3/
  edd at max:~$

Might be an upstream issue at BioConductor, might be a debian-med issue.

Dirk
 
| Would be nice if someone could check if these packages really work (or
| if e.g. only documentation is broken).
| 
| 		Regards, Axel
| -- 
|  ,''`.  |  Axel Beckert <abe at debian.org>, http://people.debian.org/~abe/
| : :' :  |  Debian Developer, ftp.ch.debian.org Admin
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-- 
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org