[Debian-med-packaging] Bug#882349: sra-sdk FTBFS with glibc 2.25

[Adrian Bunk]

Source: sra-sdk
Version: 2.8.1-2+dfsg-2
Severity: serious
Tags: buster sid
Forwarded: https://github.com/ncbi/sra-tools/issues/67

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/sra-sdk.html

...
/build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:3998:17: error: conflicting types for 'canonicalize'
 static unsigned canonicalize(uint32_t cigar[], unsigned n)
                 ^~~~~~~~~~~~
In file included from /usr/include/features.h:406:0,
                 from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33,
                 from /usr/include/stdint.h:26,
                 from /usr/lib/gcc/x86_64-linux-gnu/7/include/stdint.h:9,
                 from /usr/include/ncbi-vdb/kfc/defs.h:34,
                 from /usr/include/ncbi-vdb/klib/defs.h:31,
                 from /build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:27:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:435:1: note: previous declaration of 'canonicalize' was here
 __MATHDECL_1 (int, canonicalize,, (_Mdouble_ *__cx, const _Mdouble_ *__x));
 ^
/build/1st/sra-sdk-2.8.1-2+dfsg/tools/bam-loader/bam.c:2990:17: warning: 'SequenceLengthFromCIGAR' defined but not used [-Wunused-function]
 static unsigned SequenceLengthFromCIGAR(const BAM_Alignment *self)
                 ^~~~~~~~~~~~~~~~~~~~~~~
/build/1st/sra-sdk-2.8.1-2+dfsg/build/Makefile.rules:31: recipe for target 'bam.o' failed
make[5]: *** [bam.o] Error 1