[Debian-med-packaging] Bug#882382: first step to fix the r-cran-epi autopkg tests

[Matthias Klose]

Package: src:r-cran-epi
Version: 2.19-1
Severity: important
Tags: patch

first step to fix the r-cran-epi autopkg tests, by making sure that a required
file is found.  However the tests still fail.

diff -Nru r-cran-epi-2.19/debian/changelog r-cran-epi-2.19/debian/changelog
--- r-cran-epi-2.19/debian/changelog	2017-10-12 14:57:22.000000000 +0000
+++ r-cran-epi-2.19/debian/changelog	2017-11-21 11:58:49.000000000 +0000
@@ -1,3 +1,9 @@
+r-cran-epi (2.19-1ubuntu1) bionic; urgency=medium
+
+  * Fix autopkg tests by copying required files to the test directory.
+
+ -- Matthias Klose <doko at ubuntu.com>  Tue, 21 Nov 2017 12:58:49 +0100
+
 r-cran-epi (2.19-1) unstable; urgency=medium

   * New upstream version
diff -Nru r-cran-epi-2.19/debian/tests/run-unit-test
r-cran-epi-2.19/debian/tests/run-unit-test
--- r-cran-epi-2.19/debian/tests/run-unit-test	2017-10-12 14:57:22.000000000 +0000
+++ r-cran-epi-2.19/debian/tests/run-unit-test	2017-11-21 11:56:04.000000000 +0000
@@ -6,8 +6,11 @@
   ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
 fi
 cd $ADTTMP
-cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
-gunzip *.gz
+cp /usr/share/doc/$pkg/examples/vignettes .
+gunzip vignettes/*.gz
+mkdir R
+cp /usr/lib/R/site-library/Epi/doc/simLexis.R R/.
+cd vignettes
 for rnw in `ls *.[rR]nw` ; do
 rfile=`echo $rnw | sed 's/\.[rR]nw/.R/'`
 R --no-save <<EOT