[Debian-med-packaging] libminc has build test errors after using debhelper 10

[Andreas Tille]

On Thu, Nov 30, 2017 at 03:13:22PM +0100, Andreas Tille wrote:
> Steve, ping?

I think I've got it - the hdf5 patch was missing in Git ...
 
> On Wed, Nov 22, 2017 at 03:37:30PM +0100, Andreas Tille wrote:
> > Hi Steve,
> > 
> > in the process of migrating all our packages to SVN I'm facing some
> > trouble with libminc which is now at
> > 
> >    https://anonscm.debian.org/git/debian-med/libminc.git
> > 
> > I guess switching to debhelper 10 has caused some different build
> > behaviour but using --no-parallel did not changed anything.  So I left
> > this debhelper compat level and ask you whether you might have some idea
> > what might cause:
> > 
> > 
> > ...
> >  7/51 Test  #7: icv_dim-2 ........................***Failed    0.01 sec
> > HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140489048498944:
> >   #000: ../../../src/H5Gdeprec.c line 272 in H5Gopen1(): not a location
> >     major: Invalid arguments to routine
> >     minor: Inappropriate type
> >   #001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID
> >     major: Invalid arguments to routine
> >     minor: Bad value
> > (from micreate): Can't write attribute 'ident'
> > (from micreate): Can't write attribute 'minc_version'
> > ncdimdef: ncid 0: NetCDF: Not a valid ID
> > 0a1,15
> > > adim start = 23, step = -0.4
> > > bdim start = 27.6, step = -2.4
> > > norm : max = 200, min = -200
> > >   112  112  116  116    0
> > >   122  122  126  126    0
> > >   132  132  136  136    0
> > >     0    0    0    0    0
> > >   212  212  216  216    0
> > >   222  222  226  226    0
> > >   232  232  236  236    0
> > >     0    0    0    0    0
> > >   312  312  316  316    0
> > >   322  322  326  326    0
> > >   332  332  336  336    0
> > >     0    0    0    0    0
> > 
> >       Start  8: icv_fillvalue-1
> >  8/51 Test  #8: icv_fillvalue-1 ..................   Passed    0.01 sec
> > ...
> > 11/51 Test #11: icv_range-2 ......................***Failed    0.01 sec
> > HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 140340081074944:
> >   #000: ../../../src/H5Gdeprec.c line 272 in H5Gopen1(): not a location
> >     major: Invalid arguments to routine
> >     minor: Inappropriate type
> >   #001: ../../../src/H5Gloc.c line 253 in H5G_loc(): invalid object ID
> >     major: Invalid arguments to routine
> >     minor: Bad value
> > (from micreate): Can't write attribute 'ident'
> > (from micreate): Can't write attribute 'minc_version'
> > ...
> > 75% tests passed, 13 tests failed out of 51
> > 
> > Total Test time (real) =  28.11 sec
> > 
> > The following tests FAILED:
> >           3 - minc_types-2 (Failed)
> >           5 - icv_dim1-2 (Failed)
> >           7 - icv_dim-2 (Failed)
> >           9 - icv_fillvalue-2 (Failed)
> >          11 - icv_range-2 (Failed)
> >          21 - minc_conversion (Failed)
> >          25 - test_xfm_3 (Failed)
> >          26 - copy_xfm (Failed)
> >          27 - verify_xfm_1 (Failed)
> >          28 - verify_xfm_float (Failed)
> >          29 - verify_xfm_short (Failed)
> >          30 - verify_xfm_byte (Failed)
> >          31 - verify_xfm_2 (Failed)
> > Errors while running CTest
> > Makefile:143: recipe for target 'test' failed
> > 
> > 
> > I think there is a good chance that the issue is not related to my
> > changes but rather to a change in hdf5.  Could you please have a look?
> > 
> > Kind regards
> > 
> >        Andreas.
> > 
> > -- 
> > http://fam-tille.de
> 
> -- 
> http://fam-tille.de
> 
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