[Debian-med-packaging] Bug#877941: igv: FTBFS: SVGTest.java:111: error: cannot access Localizable

[Andreas Beckmann]

Source: igv
Version: 2.3.90+dfsg-1
Severity: serious
Tags: sid buster
Justification: fails to build from source

Hi,

igv recently started to FTBFS in sid:

compile:
    [javac] Compiling 893 source files to /build/igv-2.3.90+dfsg/tmp
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.6
    [javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:33: warning: NotImplementedException is internal proprietary API and may be removed in a future release
    [javac] import sun.reflect.generics.reflectiveObjects.NotImplementedException;
    [javac]                                              ^
    [javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:33: warning: NotImplementedException is internal proprietary API and may be removed in a future release
    [javac] import sun.reflect.generics.reflectiveObjects.NotImplementedException;
    [javac]                                              ^
    [javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:33: warning: NotImplementedException is internal proprietary API and may be removed in a future release
    [javac] import sun.reflect.generics.reflectiveObjects.NotImplementedException;
    [javac]                                              ^
    [javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/tools/sort/BAMSorter.java:102: warning: NotImplementedException is internal proprietary API and may be removed in a future release
    [javac]         throw new NotImplementedException();
    [javac]                   ^
    [javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/ui/svg/SVGTest.java:111: error: cannot access Localizable
    [javac]              DOMImplementation domImpl = GenericDOMImplementation.getDOMImplementation();
    [javac]                                                                  ^
    [javac]   class file for org.apache.batik.i18n.Localizable not found
    [javac] /build/igv-2.3.90+dfsg/src/org/broad/igv/ui/svg/SVGTest.java:126: error: cannot access XMLConstants
    [javac]              svgGenerator.stream(out, false);
    [javac]                          ^
    [javac]   class file for org.apache.batik.util.XMLConstants not found
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 2 errors
    [javac] 4 warnings

BUILD FAILED
/build/igv-2.3.90+dfsg/build.xml:181: Compile failed; see the compiler error output for details.


Andreas
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