[Debian-med-packaging] Bug#880258: Bug#880258: picard-tools: FTBFS: CollectRrbsMetricsTest.java:29: error: package org.testng does not exist
Olivier Sallou
olivier.sallou at irisa.fr
Tue Oct 31 14:05:01 UTC 2017
testng maven definition needs to be modified in build.graddle to match
testng debian pom.
Following patch fix the compilation for tests:
--- a/build.gradle
+++ b/build.gradle
@@ -32,7 +32,7 @@
compile 'com.github.samtools:htsjdk:' + htsjdkVersion
//tools dependency for doclet requires sdk devel
compile(files(((URLClassLoader)
ToolProvider.getSystemToolClassLoader()).getURLs()))
- testCompile 'org.testng:testng:6.9.10'
+ testCompile 'org.testng:testng:debian'
}
sourceCompatibility = 1.8
however, all tests fail with the same issue than htsjdk when using
testng in graddle
Cannot nest operations in the same thread. Each nested operation must
run in its own thread.
java.lang.UnsupportedOperationException: Cannot nest operations in the
same thread. Each nested operation must run in its own thread.
I have no idea why (not using gradle), and asked to java team but got
not answer for the moment.
Olivier
On 10/30/2017 08:26 PM, Lucas Nussbaum wrote:
> Source: picard-tools
> Version: 2.8.1+dfsg-2
> Severity: serious
> Tags: buster sid
> User: debian-qa at lists.debian.org
> Usertags: qa-ftbfs-20171030 qa-ftbfs
> Justification: FTBFS on amd64
>
> Hi,
>
> During a rebuild of all packages in sid, your package failed to build on
> amd64.
>
> Relevant part (hopefully):
>> make[1]: Entering directory '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg'
>> # Tests do not work with locales with a different decimal separator
>> # (for example ',')
>> env LC_ALL=C \
>> dh_auto_build -- test
>> mkdir -p .gradle/init.d
>> cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
>> gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 --parallel --max-workers=16 test
>> Initialized native services in: /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/native
>> To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/3.2.1/userguide/gradle_daemon.html.
>> Starting daemon process: workingDir = /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon/3.2.1, daemonArgs: [/usr/lib/jvm/java-8-openjdk-amd64/bin/java, -XX:MaxPermSize=256m, -XX:+HeapDumpOnOutOfMemoryError, -Xmx1024m, -Dfile.encoding=UTF-8, -Duser.country=US, -Duser.language=en, -Duser.variant, -cp, /usr/share/gradle/lib/gradle-launcher-3.2.1.jar, org.gradle.launcher.daemon.bootstrap.GradleDaemon, 3.2.1]
>> Starting process 'Gradle build daemon'. Working directory: /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon/3.2.1 Command: /usr/lib/jvm/java-8-openjdk-amd64/bin/java -XX:MaxPermSize=256m -XX:+HeapDumpOnOutOfMemoryError -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-3.2.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 3.2.1
>> Successfully started process 'Gradle build daemon'
>> An attempt to start the daemon took 0.62 secs.
>> Connected to daemon DaemonInfo{pid=103081, address=[2e268c2e-3c63-4337-afd4-2e65ac75aac2 port:38729, addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]], state=Busy, lastBusy=1509376996459, context=DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]}. Dispatching request BuildAndStop{id=642d5534-8837-4bd9-b101-9d40666366dc.1, currentDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg}.
>> Received result org.gradle.launcher.daemon.protocol.BuildStarted at 4a3631f8 from daemon DaemonInfo{pid=103081, address=[2e268c2e-3c63-4337-afd4-2e65ac75aac2 port:38729, addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]], state=Busy, lastBusy=1509376996459, context=DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]} (build should be starting).
>> The client will now receive all logging from the daemon (pid: 103081). The daemon log file: /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon/3.2.1/daemon-103081.out.log
>> Closing daemon's stdin at end of input.
>> The daemon will no longer process any standard input.
>> Daemon will be stopped at the end of the build stopping after processing
>> Executing build with daemon context: DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]
>> Starting Build
>> Loading the Maven rules...
>> Settings evaluated using settings file '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/settings.gradle'.
>> Projects loaded. Root project using build file '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/build.gradle'.
>> Included projects: [root project 'picard']
>> Keep-alive timer started
>> Adding Debian repository to project 'picard'
>> Parallel execution is an incubating feature.
>> Evaluating root project 'picard' using build file '/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/build.gradle'.
>> Starting process 'command 'dpkg-parsechangelog''. Working directory: /<<BUILDDIR>>/picard-tools-2.8.1+dfsg Command: dpkg-parsechangelog -S Version
>> Successfully started process 'command 'dpkg-parsechangelog''
>> build for version:2.8.1
>> The Task.leftShift(Closure) method has been deprecated and is scheduled to be removed in Gradle 5.0. Please use Task.doLast(Action) instead.
>> at org.gradle.api.internal.AbstractTask.leftShift(AbstractTask.java:505)
>> at org.gradle.api.Task$leftShift.call(Unknown Source)
>> at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:48)
>> at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:113)
>> at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:125)
>> at build_52qy3g2n0gbryc0a9kslk2sby.run(/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/build.gradle:214)
>> at org.gradle.groovy.scripts.internal.DefaultScriptRunnerFactory$ScriptRunnerImpl.run(DefaultScriptRunnerFactory.java:90)
>> at org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl$2.run(DefaultScriptPluginFactory.java:176)
>> at org.gradle.configuration.ProjectScriptTarget.addConfiguration(ProjectScriptTarget.java:77)
>> at org.gradle.configuration.DefaultScriptPluginFactory$ScriptPluginImpl.apply(DefaultScriptPluginFactory.java:181)
>> at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:38)
>> at org.gradle.configuration.project.BuildScriptProcessor.execute(BuildScriptProcessor.java:25)
>> at org.gradle.configuration.project.ConfigureActionsProjectEvaluator.evaluate(ConfigureActionsProjectEvaluator.java:34)
>> at org.gradle.configuration.project.LifecycleProjectEvaluator.evaluate(LifecycleProjectEvaluator.java:55)
>> at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:573)
>> at org.gradle.api.internal.project.DefaultProject.evaluate(DefaultProject.java:125)
>> at org.gradle.execution.TaskPathProjectEvaluator.configureHierarchy(TaskPathProjectEvaluator.java:42)
>> at org.gradle.configuration.DefaultBuildConfigurer.configure(DefaultBuildConfigurer.java:38)
>> at org.gradle.initialization.DefaultGradleLauncher$2.run(DefaultGradleLauncher.java:162)
>> at org.gradle.internal.Factories$1.create(Factories.java:25)
>> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:91)
>> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:53)
>> at org.gradle.initialization.DefaultGradleLauncher.doBuildStages(DefaultGradleLauncher.java:159)
>> at org.gradle.initialization.DefaultGradleLauncher.access$200(DefaultGradleLauncher.java:36)
>> at org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:118)
>> at org.gradle.initialization.DefaultGradleLauncher$1.create(DefaultGradleLauncher.java:112)
>> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:91)
>> at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:63)
>> at org.gradle.initialization.DefaultGradleLauncher.doBuild(DefaultGradleLauncher.java:112)
>> at org.gradle.initialization.DefaultGradleLauncher.run(DefaultGradleLauncher.java:98)
>> at org.gradle.launcher.exec.GradleBuildController.run(GradleBuildController.java:66)
>> at org.gradle.tooling.internal.provider.ExecuteBuildActionRunner.run(ExecuteBuildActionRunner.java:28)
>> at org.gradle.launcher.exec.ChainingBuildActionRunner.run(ChainingBuildActionRunner.java:35)
>> at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:41)
>> at org.gradle.launcher.exec.InProcessBuildActionExecuter.execute(InProcessBuildActionExecuter.java:26)
>> at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:75)
>> at org.gradle.tooling.internal.provider.ContinuousBuildActionExecuter.execute(ContinuousBuildActionExecuter.java:49)
>> at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:44)
>> at org.gradle.tooling.internal.provider.ServicesSetupBuildActionExecuter.execute(ServicesSetupBuildActionExecuter.java:29)
>> at org.gradle.launcher.daemon.server.exec.ExecuteBuild.doBuild(ExecuteBuild.java:67)
>> at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.WatchForDisconnection.execute(WatchForDisconnection.java:47)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.ResetDeprecationLogger.execute(ResetDeprecationLogger.java:26)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.RequestStopIfSingleUsedDaemon.execute(RequestStopIfSingleUsedDaemon.java:34)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:74)
>> at org.gradle.launcher.daemon.server.exec.ForwardClientInput$2.call(ForwardClientInput.java:72)
>> at org.gradle.util.Swapper.swap(Swapper.java:38)
>> at org.gradle.launcher.daemon.server.exec.ForwardClientInput.execute(ForwardClientInput.java:72)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.LogAndCheckHealth.execute(LogAndCheckHealth.java:50)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.LogToClient.doBuild(LogToClient.java:60)
>> at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.EstablishBuildEnvironment.doBuild(EstablishBuildEnvironment.java:72)
>> at org.gradle.launcher.daemon.server.exec.BuildCommandOnly.execute(BuildCommandOnly.java:36)
>> at org.gradle.launcher.daemon.server.api.DaemonCommandExecution.proceed(DaemonCommandExecution.java:120)
>> at org.gradle.launcher.daemon.server.exec.StartBuildOrRespondWithBusy$1.run(StartBuildOrRespondWithBusy.java:50)
>> at org.gradle.launcher.daemon.server.DaemonStateCoordinator$1.run(DaemonStateCoordinator.java:293)
>> at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:54)
>> at org.gradle.internal.concurrent.StoppableExecutorImpl$1.run(StoppableExecutorImpl.java:40)
>> at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
>> at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
>> at java.lang.Thread.run(Thread.java:748)
>> Adding task debianMavenPom to project 'picard'
>> Configuring javadoc links
>> All projects evaluated.
>> Selected primary task 'test' from project :
>> Tasks to be executed: [task ':compileJava', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test']
>> Using 16 parallel executor threads
>> :compileJava (Thread[Task worker,5,main]) started.
>> :compileJava
>> Putting task artifact state for task ':compileJava' into context took 0.042 secs.
>> Task :compileJava class loader hash: 83f3637f6805a7b149525a93c5faad58
>> Task :compileJava actions class loader hash: d883a18cf154fc57e90f4d3fa9e5588f
>> Replacing com.google.guava:guava:jar:15.0 -> com.google.guava:guava:jar:debian
>> Passing through com.google.guava:guava-parent:jar:debian
>> Replacing com.github.samtools:htsjdk:jar:2.8.0 -> com.github.samtools:htsjdk:jar:debian
>> Passing through commons-logging:commons-logging:jar:debian
>> Passing through org.apache.commons:commons-parent:jar:debian
>> Passing through org.apache:apache:jar:debian
>> Passing through org.apache.commons:commons-compress:jar:debian
>> Passing through gov.nih.nlm.ncbi:ngs-java:jar:debian
>> Passing through org.tukaani:xz:jar:debian
>> Passing through org.apache.commons:commons-jexl:jar:debian
>> Passing through org.xerial.snappy:snappy-java:jar:debian
>> Skipping task ':compileJava' as it is up-to-date (took 0.397 secs).
>> :compileJava UP-TO-DATE
>> :compileJava (Thread[Task worker,5,main]) completed. Took 0.458 secs.
>> :processResources (Thread[Task worker Thread 2,5,main]) started.
>> :processResources
>> Putting task artifact state for task ':processResources' into context took 0.001 secs.
>> Task :processResources class loader hash: 83f3637f6805a7b149525a93c5faad58
>> Task :processResources actions class loader hash: fde60ab3b9776111ebd9bf87f24df716
>> Skipping task ':processResources' as it is up-to-date (took 0.004 secs).
>> :processResources UP-TO-DATE
>> :processResources (Thread[Task worker Thread 2,5,main]) completed. Took 0.007 secs.
>> :classes (Thread[Task worker Thread 3,5,main]) started.
>> :classes
>> Skipping task ':classes' as it has no actions.
>> :classes UP-TO-DATE
>> :classes (Thread[Task worker Thread 3,5,main]) completed. Took 0.001 secs.
>> :compileTestJava (Thread[Task worker Thread 3,5,main]) started.
>> :compileTestJava
>> Putting task artifact state for task ':compileTestJava' into context took 0.0 secs.
>> Task :compileTestJava class loader hash: 83f3637f6805a7b149525a93c5faad58
>> Task :compileTestJava actions class loader hash: d883a18cf154fc57e90f4d3fa9e5588f
>> Replacing org.testng:testng:jar:6.9.10 -> org.testng:testng:jar:6.x
>> POM relocation to an other version number is not fully supported in Gradle : org.testng:testng:6.x relocated to org.testng:testng:debian.
>> Please update your dependency to directly use the correct version 'org.testng:testng:debian'.
>> Resolution will only pick dependencies of the relocated element. Artifacts and other metadata will be ignored.
>> Passing through org.testng:testng:jar:debian
>> Passing through org.beanshell:bsh:jar:debian
>> Passing through com.beust:jcommander:jar:1.x
>> Executing task ':compileTestJava' (up-to-date check took 0.076 secs) due to:
>> No history is available.
>> All input files are considered out-of-date for incremental task ':compileTestJava'.
>> Compiling with JDK Java compiler API.
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:29: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:30: error: package org.testng.annotations does not exist
>> import org.testng.annotations.AfterTest;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:31: error: package org.testng.annotations does not exist
>> import org.testng.annotations.BeforeTest;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/metrics/CollectRrbsMetricsTest.java:32: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FixMateInformationTest.java:27: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FixMateInformationTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CompareSAMsTest.java:26: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CompareSAMsTest.java:27: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:27: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.BeforeTest;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FilterSamReadsTest.java:30: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SplitSamByLibraryTest.java:29: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SplitSamByLibraryTest.java:30: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/GatherBamFilesTest.java:4: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/GatherBamFilesTest.java:5: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/util/ReadNameParserTests.java:4: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/util/ReadNameParserTests.java:5: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/util/ReadNameParserTests.java:6: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamToFastqTest.java:34: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamToFastqTest.java:35: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamToFastqTest.java:36: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/DuplicationMetricsTest.java:27: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/DuplicationMetricsTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/DuplicationMetricsTest.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeBamAlignmentTest.java:29: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeBamAlignmentTest.java:30: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeBamAlignmentTest.java:31: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/testers/ValidateSamTester.java:3: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/testers/SamFileTester.java:12: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/testers/CleanSamTester.java:13: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CreateSequenceDictionaryTest.java:26: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CreateSequenceDictionaryTest.java:27: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CreateSequenceDictionaryTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/ViewSamTest.java:34: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/ViewSamTest.java:35: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SetNmMdAndUqTagsTest.java:3: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SetNmMdAndUqTagsTest.java:4: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SetNmMdAndUqTagsTest.java:5: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTester.java:38: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/SimpleMarkDuplicatesWithMateCigarTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTest.java:31: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AbstractMarkDuplicatesCommandLineProgramTest.java:32: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcHashBasedDuplicatesFinderTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcHashBasedDuplicatesFinderTest.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:34: error: package org.testng does not exist
>> import static org.testng.Assert.assertTrue;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/ElcIdenticalBasesDuplicatesFinderTest.java:34: error: static import only from classes and interfaces
>> import static org.testng.Assert.assertTrue;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:38: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:39: error: package org.testng.annotations does not exist
>> import org.testng.annotations.BeforeClass;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:40: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesTest.java:41: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java:27: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/UmiAwareMarkDuplicatesWithMateCigarTester.java:30: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java:4: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/util/OpticalDuplicateFinderTest.java:5: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AsIsMarkDuplicatesTester.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/AsIsMarkDuplicatesTester.java:30: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/MarkDuplicatesWithMateCigarTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java:28: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/markduplicates/EstimateLibraryComplexityTest.java:30: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:27: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:34: error: package org.testng does not exist
>> import static org.testng.Assert.assertEquals;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:34: error: static import only from classes and interfaces
>> import static org.testng.Assert.assertEquals;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:35: error: package org.testng does not exist
>> import static org.testng.Assert.assertTrue;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/SamFileConverterTest.java:35: error: static import only from classes and interfaces
>> import static org.testng.Assert.assertTrue;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AddCommentsToBamTest.java:7: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AddCommentsToBamTest.java:8: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:32: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:33: error: package org.testng.annotations does not exist
>> import org.testng.annotations.BeforeClass;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:34: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/FastqToSamTest.java:35: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AbstractAlignmentMergerTest.java:5: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/AbstractAlignmentMergerTest.java:6: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/RevertSamTest.java:34: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/RevertSamTest.java:35: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/RevertSamTest.java:36: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:14: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:15: error: package org.testng.annotations does not exist
>> import org.testng.annotations.AfterTest;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:16: error: package org.testng.annotations does not exist
>> import org.testng.annotations.BeforeTest;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:17: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:18: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:30: error: package org.testng does not exist
>> import static org.testng.Assert.assertEquals;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/PositionBasedDownsampleSamTest.java:30: error: static import only from classes and interfaces
>> import static org.testng.Assert.assertEquals;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CleanSamTest.java:32: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CleanSamTest.java:33: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/CleanSamTest.java:34: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeSamFilesTest.java:31: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/sam/MergeSamFilesTest.java:32: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/PicardCommandLineTest.java:3: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/CommandLineParserTest.java:27: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/CommandLineParserTest.java:28: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/cmdline/CommandLineParserTest.java:29: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/ScatterIntervalsByNsTest.java:9: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/ScatterIntervalsByNsTest.java:10: error: package org.testng.annotations does not exist
>> import org.testng.annotations.DataProvider;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/ScatterIntervalsByNsTest.java:11: error: package org.testng.annotations does not exist
>> import org.testng.annotations.Test;
>> ^
>> /<<BUILDDIR>>/picard-tools-2.8.1+dfsg/src/test/java/picard/util/IntervalListToBedTest.java:4: error: package org.testng does not exist
>> import org.testng.Assert;
>> ^
>> Note: Some input files use or override a deprecated API.
>> Note: Recompile with -Xlint:deprecation for details.
>> Note: Some input files use unchecked or unsafe operations.
>> Note: Recompile with -Xlint:unchecked for details.
>> 100 errors
>> :compileTestJava FAILED
>> :compileTestJava (Thread[Task worker Thread 3,5,main]) completed. Took 1.959 secs.
>>
>> FAILURE: Build failed with an exception.
>>
>> * What went wrong:
>> Execution failed for task ':compileTestJava'.
>>> Compilation failed; see the compiler error output for details.
>> * Try:
>> Run with --debug option to get more log output.
>>
>> * Exception is:
>> org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':compileTestJava'.
>> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:84)
>> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:55)
>> at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:61)
>> at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:58)
>> at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:88)
>> at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:45)
>> at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:51)
>> at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54)
>> at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43)
>> at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34)
>> at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:233)
>> at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:215)
>> at org.gradle.execution.taskgraph.AbstractTaskPlanExecutor$TaskExecutorWorker.processTask(AbstractTaskPlanExecutor.java:74)
>> at org.gradle.execution.taskgraph.AbstractTaskPlanExecutor$TaskExecutorWorker.run(AbstractTaskPlanExecutor.java:55)
>> at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:54)
>> at org.gradle.internal.concurrent.StoppableExecutorImpl$1.run(StoppableExecutorImpl.java:40)
>> Caused by: org.gradle.api.internal.tasks.compile.CompilationFailedException: Compilation failed; see the compiler error output for details.
>> at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:48)
>> at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:33)
>> at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.delegateAndHandleErrors(NormalizingJavaCompiler.java:104)
>> at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:53)
>> at org.gradle.api.internal.tasks.compile.NormalizingJavaCompiler.execute(NormalizingJavaCompiler.java:38)
>> at org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:35)
>> at org.gradle.api.internal.tasks.compile.CleaningJavaCompilerSupport.execute(CleaningJavaCompilerSupport.java:25)
>> at org.gradle.api.tasks.compile.JavaCompile.performCompilation(JavaCompile.java:188)
>> at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:169)
>> at org.gradle.api.tasks.compile.JavaCompile.compile(JavaCompile.java:112)
>> at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)
>> at org.gradle.api.internal.project.taskfactory.DefaultTaskClassInfoStore$IncrementalTaskAction.doExecute(DefaultTaskClassInfoStore.java:163)
>> at org.gradle.api.internal.project.taskfactory.DefaultTaskClassInfoStore$StandardTaskAction.execute(DefaultTaskClassInfoStore.java:134)
>> at org.gradle.api.internal.project.taskfactory.DefaultTaskClassInfoStore$StandardTaskAction.execute(DefaultTaskClassInfoStore.java:123)
>> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:95)
>> at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:76)
>> ... 15 more
>>
>>
>> BUILD FAILED
>>
>> Total time: 5.997 secs
>> Stopped 0 compiler daemon(s).
>> Received result Failure[value=org.gradle.initialization.ReportedException: org.gradle.internal.exceptions.LocationAwareException: Execution failed for task ':compileTestJava'.] from daemon DaemonInfo{pid=103081, address=[2e268c2e-3c63-4337-afd4-2e65ac75aac2 port:38729, addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]], state=Busy, lastBusy=1509376996459, context=DefaultDaemonContext[uid=2cc7999a-a025-4898-ba87-3e84d29d2241,javaHome=/usr/lib/jvm/java-8-openjdk-amd64,daemonRegistryDir=/<<BUILDDIR>>/picard-tools-2.8.1+dfsg/.gradle/daemon,pid=103081,idleTimeout=120000,daemonOpts=-XX:MaxPermSize=256m,-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]} (build should be done).
>> dh_auto_build: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=picard-tools -Dfile.encoding=UTF-8 --parallel --max-workers=16 test returned exit code 1
>> debian/rules:16: recipe for target 'override_dh_auto_test' failed
>> make[1]: *** [override_dh_auto_test] Error 25
> The full build log is available from:
> http://aws-logs.debian.net/2017/10/30/picard-tools_2.8.1+dfsg-2_unstable.log
>
> A list of current common problems and possible solutions is available at
> http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
>
> About the archive rebuild: The rebuild was done on EC2 VM instances from
> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
> failed build was retried once to eliminate random failures.
>
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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