[Debian-med-packaging] Bug#853568: Nanopolish: gcc-7 issue solved, but immintrin.h missing on most architectures

[Andreas Tille]

control: tags -1 help

Hi,

the gcc-7 issue of nanopolish described in latest upstream (0.8.1) which
is now in unstable but according to the build logs[1] on most architecture
the build fails with

...
cc -o src/thirdparty/scrappie/scrappie_common.o -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security  -fPIC src/thirdparty/scrappie/scrappie_common.c
In file included from src/thirdparty/scrappie/scrappie_common.c:3:0:
src/thirdparty/scrappie/util.h:4:14: fatal error: immintrin.h: No such file or directory
 #    include <immintrin.h>
              ^~~~~~~~~~~~~
compilation terminated.
...


On amd64 this is provided by libgcc-*-dev package - how to build the
package on those other architectures?

Strangely enough on i386 the build fails with

   /usr/bin/ld: cannot find -lhdf5

which I do not understand as well ...

Thanks for any help

        Andreas.


[1] https://buildd.debian.org/status/package.php?p=nanopolish

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