[Debian-med-packaging] Bug#894359: Help needed to port beast2-mcmc to Java 9

[Andreas Tille]

On Fri, Apr 06, 2018 at 01:50:39PM +0200, Emmanuel Bourg wrote:
> Le 06/04/2018 à 13:45, Andreas Tille a écrit :
> 
> >     [javac] error: package org.fest.util does not exist
> 
> fest-util.jar?

Better, but not solved:


...
compile-all:
     [echo] Building BEAST 2
    [mkdir] Created dir: /build/beast2-mcmc-2.4.8+dfsg/build
    [javac] Compiling 468 source files to /build/beast2-mcmc-2.4.8+dfsg/build
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.8
    [javac] /build/beast2-mcmc-2.4.8+dfsg/src/beast/util/XMLParserUtils.java:25: warning: CoreDocumentImpl is internal proprietary API and may be removed in a future release
    [javac] import com.sun.org.apache.xerces.internal.dom.CoreDocumentImpl;
    [javac]                                              ^
    [javac] /build/beast2-mcmc-2.4.8+dfsg/src/beast/util/XMLParserUtils.java:120: warning: CoreDocumentImpl is internal proprietary API and may be removed in a future release
    [javac]                     ((CoreDocumentImpl) doc).putIdentifier(id, (Element) node);
    [javac]                       ^
    [javac] /build/beast2-mcmc-2.4.8+dfsg/src/beast/util/TreeParser.java:353: error: cannot find symbol
    [javac]         CharStream charStream = CharStreams.fromString(newick);
    [javac]                                 ^
    [javac]   symbol:   variable CharStreams
    [javac]   location: class TreeParser
    [javac] /build/beast2-mcmc-2.4.8+dfsg/src/beast/util/treeparser/NewickLexer.java:98: error: method does not override or implement a method from a supertype
    [javac]     @Override
    [javac]     ^
    [javac] Note: Some input files use or override a deprecated API.
    [javac] Note: Recompile with -Xlint:deprecation for details.
    [javac] Note: Some input files use unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 2 errors
    [javac] 3 warnings

BUILD FAILED
/build/beast2-mcmc-2.4.8+dfsg/build.xml:77: Compile failed; see the compiler error output for details.
...


Thanks anyway

       Andreas.
 

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