[Debian-med-packaging] Bug#895527: libsmithwaterman FTBFS on mips/mipsel: symbol differences

[Andreas Tille]

Hi Adrian,

you are so fast ... or are you a bot? :-P

I noticed the failure but was waiting for the build status of armhf.

Thanks a lot for your QA work

      Andreas.

On Thu, Apr 12, 2018 at 01:01:28PM +0300, Adrian Bunk wrote:
> Source: libsmithwaterman
> Version: 0.0+git20160702.2610e25-2
> Severity: serious
> 
> https://buildd.debian.org/status/package.php?p=libsmithwaterman&suite=sid
> 
> ...
>    dh_makeshlibs -a -O--no-parallel
> dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below
> dpkg-gensymbols: warning: some symbols or patterns disappeared in the symbols file: see diff output below
> dpkg-gensymbols: warning: debian/libsmithwaterman0/DEBIAN/symbols doesn't match completely debian/libsmithwaterman0.symbols
> --- debian/libsmithwaterman0.symbols (libsmithwaterman0_0.0+git20160702.2610e25-2_mips)
> +++ dpkg-gensymbolsKP3gJG	2018-04-12 08:49:24.980726993 +0000
> @@ -47,7 +47,7 @@
>   _ZN20CBandedSmithWatermanC2Effffj at Base 0.0+git20160702.2610e25
>   _ZN20CBandedSmithWatermanD1Ev at Base 0.0+git20160702.2610e25
>   _ZN20CBandedSmithWatermanD2Ev at Base 0.0+git20160702.2610e25
> - _ZNKSt5ctypeIcE8do_widenEc at Base 0.0+git20160702.2610e25
> +#MISSING: 0.0+git20160702.2610e25-2# _ZNKSt5ctypeIcE8do_widenEc at Base 0.0+git20160702.2610e25
>   _ZNSt6vectorI11IndelAlleleSaIS0_EE12emplace_backIJS0_EEEvDpOT_ at Base 0.0+git20160702.2610e25
>   _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.2610e25
>   _ZNSt6vectorI11IndelAlleleSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_ at Base 0.0+git20160702.2610e25
> @@ -71,6 +71,7 @@
>   (arch=alpha armel armhf any-i386 mips mipsel s390x powerpc powerpcspe ppc64)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_ at Base 0.0+git20160702.2610e25
>   (arch=any-amd64 arm64 mips64el ppc64el hppa ia64 riscv64 sh4 sparc64 x32)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_ at Base 0.0+git20160702.2610e25
>   _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E at Base 0.0+git20160702.2610e25
> + _ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_ at Base 0.0+git20160702.2610e25-2
>   _ZeqRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
>   _ZlsRSoRK11IndelAllele at Base 0.0+git20160702.2610e25
>   _ZltRK11IndelAlleleS1_ at Base 0.0+git20160702.2610e25
> dh_makeshlibs: failing due to earlier errors
> make: *** [debian/rules:8: binary-arch] Error 2
> 
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