[Debian-med-packaging] Bug#879619: Autopkgtest for ncbi-tools6

[Liubov Chuprikova]

Hi Aaron,

On Thu, 5 Apr 2018 at 23:30 Aaron M. Ucko <amu at alum.mit.edu> wrote:

> Liubov Chuprikova <chuprikovalv at gmail.com> writes:
>
> > the same directory. What do you think about the whole test at this stage?
>
> Great, thanks!  I suppose you could check for specific output contents
> (via grep, not necessarily 100% identity), but this otherwise all looks
> good, and is a clear improvement over not having autopkgtests at all.
>

I have added simple checks for specific output content. What do you think
about my last commits? Is it an acceptable way to check or maybe you have
another idea how it should look like?

Apart from that, could you please help me with *taxblast*. I have tried to
run it providing SeqAnnot ASN.1 file as required. But I got the same error
message each time:

[taxblast] REJECT: Secure socket layer (SSL) has not been properly
initialized in the NCBI Toolkit.  Have you forgotten to call
SOCK_SetupSSL()?
[taxblast] ERROR: [URL_Connect;
https://www.ncbi.nlm.nih.gov:443/Service/dispd.cgi?service=TaxService&address=stretch.localdomain(127.0.1.1)&platform=LINUX
]  Failed to connect: Not supported
... (here the previous line repets)
[taxblast] ERROR: [HTTP;
https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=TaxService&address=stretch.localdomain(127.0.1.1)&platform=LINUX
]  Too many failed attempts (3), giving up
[taxblast] ERROR: [TaxService]  Service not found
[taxblast] ERROR: [TaxService]  Cannot connect to service
[taxblast] ERROR: NI_ServiceGet [no error] ()

Do you have any suggestions what could be wrong with it?

Thank you,
Liubov
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