[Debian-med-packaging] Help needed for Artemis

[Andreas Tille]

Hi Markus,

after fixing the patch I've build all class files successfully but
when it comes to generating the JAR it switches to a subdirectory
which leads to

...
cd jar_build/build; \
rm -rf META-INF/MANIFEST.MF; \
echo "Main-Class: uk.ac.sanger.artemis.components.ArtemisMain\nPermissions: all-permissions" > manifest-art; \
jar cmf manifest-art ../artemis.jar META-INF/services images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg images/icon.gif README.md etc \
                     artemis_sqlmap org uk com net htsjdk picard gov joptsimple ngs freemarker ; \
    echo "Main-Class: uk.ac.sanger.artemis.circular.DNADraw\nPermissions: all-permissions" > manifest-circular; \
    jar cmf manifest-circular ../DNAPlotter.jar images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg README.md etc \
                         org uk com net htsjdk picard gov joptsimple ngs freemarker ; \
echo "Main-Class: uk.ac.sanger.artemis.components.alignment.BamView\nPermissions: all-permissions" > manifest-bamview; \
jar cmf manifest-bamview ../bamview.jar META-INF/services etc org uk com net htsjdk picard gov joptsimple ngs freemarker ; \
echo "Main-Class: uk.ac.sanger.artemis.components.ActMain\nPermissions: all-permissions" > manifest-act; \
jar cmf manifest-act ../act.jar META-INF/services images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg images/icon.gif README.md etc \
                     artemis_sqlmap org uk com net htsjdk picard gov joptsimple ngs freemarker ; \

META-INF/services : no such file or directory
images/Wellcome_Sanger_Institute_Logo_Landscape_Digital_RGB_Full_Colour.jpg : no such file or directory
images/icon.gif : no such file or directory
README.md : no such file or directory
...

Is there any clever way to solve this instead of doing a lot of copying or symlinking?

Kind regards

     Andreas.

[1] https://salsa.debian.org/med-team/artemis

-- 
http://fam-tille.de