[Debian-med-packaging] Bug#842815: Help needed for change of build system to gradle of package libsis-jhdf5-java

[olivier sallou]

Le mar. 14 août 2018 à 11:32, Andreas Tille <andreas at an3as.eu> a écrit :

> Hi,
>
> upstream of libsis-jhdf5-java[1] has switched to gradle in its new
> version that is compatible with HDF5 1.10.  I tried to adapt debian/rules
> from previous manual build to buildsystem=gradle but got:
>
> ...
> Parallel execution is an incubating feature.
> Evaluating root project 'libsis-jhdf5-java' using build file
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/build.gradle'.
> Compiling build file
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/build.gradle'
> using SubsetScriptTransformer.
> Compiling build file
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/build.gradle'
> using BuildScriptTransformer.
> Compiling script
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/javaproject.gradle'
> using SubsetScriptTransformer.
> Compiling script
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/repository.gradle'
> using SubsetScriptTransformer.
> Compiling script
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/repository.gradle'
> using BuildScriptTransformer.
> Creating new cache for metadata-2.23/module-versions, path
> /build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/.gradle/caches/modules-2/metadata-2.23/module-versions.bin,
> access org.gradle.cache.        internal.DefaultCacheAccess at 350dec85
>
> FAILURE: Build failed with an exception.
>
> * Where:
> Build file
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/build.gradle'
> line: 1
>
> * What went wrong:
> A problem occurred evaluating root project 'libsis-jhdf5-java'.
> > Could not resolve all dependencies for configuration 'classpath'.
>    > Could not resolve cisd:cisd-ant-tasks:+.
>      Required by:
>          unspecified:unspecified:unspecified
>       > No cached version listing for cisd:cisd-ant-tasks:+ available for
> offline mode.
>
> * Try:
> Run with --debug option to get more log output.
>
> * Exception is:
> org.gradle.api.GradleScriptException: A problem occurred evaluating root
> project 'libsis-jhdf5-java'.
>         at
> org.gradle.groovy.scripts.internal.DefaultScriptRunnerFactory$ScriptRunnerImpl.run(DefaultScriptRunnerFactory.java:92)
> ...
>         at
> org.gradle.api.internal.artifacts.ivyservice.ivyresolve.DynamicVersionResolver.resolve(DynamicVersionResolver.java:67)
>         ... 104 more
>
>
> BUILD FAILED
>
> Total time: 5.829 secs
> Received result Failure[value=org.gradle.initialization.ReportedException:
> org.gradle.internal.exceptions.LocationAwareException: Build file
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/build.
>  gradle' line: 1
> A problem occurred evaluating root project 'libsis-jhdf5-java'.] from
> daemon DaemonInfo{pid=26176, address=[01070135-56e1-461a-92ea-35d94d1e1ee5
> port:41021, addresses:[/0:0:0:0:0:0:0:1, /127.0.0.1]],
> state=Busy, lastBusy=1534230750655,
> context=DefaultDaemonContext[uid=37bdd18f-143d-4071-ab24-f17f8d67fb44,javaHome=/usr/lib/jvm/java-10-openjdk-amd64,daemonRegistryDir=/build/libsis-jhdf5-java-18.08~pre+
>
> git20180805.da55947+dfsg/.gradle/daemon,pid=26176,idleTimeout=120000,daemonOpts=-XX:+HeapDumpOnOutOfMemoryError,-Xmx1024m,-Dfile.encoding=UTF-8,-Duser.country=US,-Duser.language=en,-Duser.variant]}
> (build       should be done).
>
>
>
> Since I had no idea how to fix this I simply tried to remove this
> dependency definition (ant is installed as Build-Dependency anyway) and
> thus I tried the following quilt patch:
>
>
> $ git diff
> diff --git a/debian/patches/fix_build_dir.patch
> b/debian/patches/fix_build_dir.patch
> index 1d652b2..163553c 100644
> --- a/debian/patches/fix_build_dir.patch
> +++ b/debian/patches/fix_build_dir.patch
> @@ -4,7 +4,7 @@ Description: Do not make wrong assumptions about directory
> name
>
>  --- a/javaproject.gradle
>  +++ b/javaproject.gradle
> -@@ -50,7 +50,7 @@ sourceSets {
> +@@ -50,13 +50,9 @@ sourceSets {
>   buildDir = 'targets/gradle'
>
>   buildscript {
> @@ -12,4 +12,10 @@ Description: Do not make wrong assumptions about
> directory name
>  +    apply from: 'repository.gradle'
>
>       repositories repositoryConfig
> -
> +-
> +-    dependencies {
> +-        classpath 'cisd:cisd-ant-tasks:+'
> +-    }
> + }
> +
> + repositories repositoryConfig
>
>
> This leads to:
>
>
> ...
> FAILURE: Build failed with an exception.
>
> * Where:
> Build file
> '/build/libsis-jhdf5-java-18.08~pre+git20180805.da55947+dfsg/build.gradle'
> line: 40
>
> * What went wrong:
> A problem occurred evaluating root project 'libsis-jhdf5-java'.
> > Could not resolve all dependencies for configuration ':runtime'.
>    > Could not resolve cisd:cisd-args4j:+.
>      Required by:
>          project :
>       > No cached version listing for cisd:cisd-args4j:+ available for
> offline mode.
>    > Could not resolve cisd:cisd-base:+.
>      Required by:
>          project :
>       > No cached version listing for cisd:cisd-base:+ available for
> offline mode.
>    > Could not resolve rinn:restrictions:+.
>      Required by:
>          project :
>       > No cached version listing for rinn:restrictions:+ available for
> offline mode.
>
>
I do not see in build deps things related to:
   cisd:cisd-args4, cisd:cisd-base, rinn:restrictions



>
>
> I wonder how I could deal with these classpath definitions in the gradle
> input.  Or would you suggest to rather stick to manual build as it was
> done before?
>
> Kind regards
>
>        Andreas.
>
>
> [1] https://salsa.debian.org/med-team/libsis-jhdf5-java
>
> --
> http://fam-tille.de
>
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