[Debian-med-packaging] Bug#906932: kmer FTBFS in clean unstable chroot

[Adrian Bunk]

On Wed, Aug 22, 2018 at 01:58:15PM +0000, Lumin wrote:
> Package: kmer
> Version: 0~20150903+r2013-4
> Severity: serious
> Justification: FTBFS in clean chroot
> 
> I cannot build kmer under both Debian experimental,
> and the debian unstable docker.
> 
> ```                                                                         ^
> In file included from atac-driver/alignOverlap/overlap.H:45,
>                  from atac-driver/alignOverlap/overlap-sort.C:19:
> atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
>        fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]);
>                              ^
> ln -f /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process1.C
> ln -f /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process2.C
> make[2]: *** No rule to make target '/root/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a', needed by 'atac-driver/alignOverlap/overlap'.  Stop.
> make[2]: *** Waiting for unfinished jobs....
> make[2]: Leaving directory '/root/kmer-0~20150903+r2013'
> make[1]: *** [debian/rules:27: override_dh_auto_build] Error 2
> make[1]: Leaving directory '/root/kmer-0~20150903+r2013'
> make: *** [debian/rules:21: build] Error 2
> dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
> ```

Are you using something like "dpkg-buildpackage -j" or "sbuild -j"?

cu
Adrian

-- 

       "Is there not promise of rain?" Ling Tan asked suddenly out
        of the darkness. There had been need of rain for many days.
       "Only a promise," Lao Er said.
                                       Pearl S. Buck - Dragon Seed