[Debian-med-packaging] Bug#915450: staden-io-lib FTBFS on big endian: test failures

[Andreas Tille]

Control: tags -1 upstream
Control: forwarded -1 James Bonfield <jkb at sanger.ac.uk>

Hi James,

unfortunately there is a series of new errors on different architectures.
Here comes the first one.

Hope this will not create to much hasle on your side

      Andreas.

On Mon, Dec 03, 2018 at 11:07:59PM +0200, Adrian Bunk wrote:
> Source: staden-io-lib
> Version: 1.14.11-2
> Severity: serious
> Tags: ftbfs
> 
> https://buildd.debian.org/status/package.php?p=staden-io-lib&suite=sid
> 
> ...
> FAIL: scram
> ===========
> 
> Loading ce.fa
> Generating ce#sorted.sam
> Generating ce#unsorted.sam
> === testing ./data/c1#bounds.sam ===
> ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator
>  ../progs/scramble  ./data/c1#bounds.sam test.out/c1#bounds.sam
>  ../progs/scramble  -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram
>  ../progs/scramble  ./data/c1#bounds.sam > test.out/tmp.sam
>  ../progs/scramble  test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam
>  ../progs/scramble  -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam
>  ../progs/scramble  test.out/c1#bounds.full.bam test.out/tmp.sam
> Invalid CRC in Deflate stream: 6614764d vs 00006614
> Failed to open file test.out/c1#bounds.full.bam
> FAIL scram.test (exit status: 1)
> 
> FAIL: scram_mt
> ==============
> 
> === testing ./data/c1#bounds.sam ===
> ./scram.test: 27: [: ./data/c1#bounds.sam: unexpected operator
>  ../progs/scramble -t4 ./data/c1#bounds.sam test.out/c1#bounds.sam
>  ../progs/scramble -t4 -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram
>  ../progs/scramble -t4 ./data/c1#bounds.sam > test.out/tmp.sam
>  ../progs/scramble -t4 test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam
>  ../progs/scramble -t4 -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam
>  ../progs/scramble -t4 test.out/c1#bounds.full.bam test.out/tmp.sam
> Invalid CRC in Deflate stream: 46b10f7a vs 000046b1
> Failed to open file test.out/c1#bounds.full.bam
> FAIL scram_mt.test (exit status: 1)
> 
> ============================================================================
> Testsuite summary for io_lib 1.14.11
> ============================================================================
> # TOTAL: 9
> # PASS:  7
> # SKIP:  0
> # XFAIL: 0
> # FAIL:  2
> # XPASS: 0
> # ERROR: 0
> ============================================================================
> See tests/test-suite.log
> ============================================================================
> make[4]: *** [Makefile:716: test-suite.log] Error 1
> 
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