[Debian-med-packaging] Bug#915460: Bug#915450: staden-io-lib FTBFS on big endian: test failures

[James Bonfield]

> > > >  ../progs/scramble  ./data/c1#bounds.sam test.out/c1#bounds.sam
> > > >  ../progs/scramble  -r ./data/c1.fa ./data/c1#bounds.sam test.out/c1#bounds.full.cram
> > > >  ../progs/scramble  ./data/c1#bounds.sam > test.out/tmp.sam
> > > >  ../progs/scramble  test.out/c1#bounds.full.cram > test.out/c1#bounds.full.sam
> > > >  ../progs/scramble  -O bam test.out/c1#bounds.full.cram > test.out/c1#bounds.full.bam
> > > >  ../progs/scramble  test.out/c1#bounds.full.bam test.out/tmp.sam
> > > > Invalid CRC in Deflate stream: 6614764d vs 00006614
> > > > Failed to open file test.out/c1#bounds.full.bam
> > > > FAIL scram.test (exit status: 1)

Upstream commit d4591b5 fixes the CRC bugs (and some other big-endian
ones revealed after the CRC issue was fixed).

The other bugs reported appear to be multi-threading related and will
be dealt with in separate commits.

James
-- 
James Bonfield (jkb at sanger.ac.uk)
The Sanger Institute, Hinxton, Cambs, CB10 1SA


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