[Debian-med-packaging] Bug#915460: staden-io-lib FTBFS on armel: scramble: cram_codecs.c:1441: cram_huffman_encode_init: Assertion `hi->data.i > 0' failed.

[Andreas Tille]

Hi James,

when I add this patch I get a failure of the test suite on amd64.
Should I sent a full build log or are you able to reproduce the
issue?

Kind regards

       Andreas.

On Fri, Dec 07, 2018 at 11:30:46AM +0000, James Bonfield wrote:
> On Tue, Dec 04, 2018 at 07:55:14AM +0100, Andreas Tille wrote:
> > > === testing ./data/xx#unsorted.sam ===
> > > ./scram.test: 27: [: ./data/xx#unsorted.sam: unexpected operator
> > >  ../progs/scramble -t4 ./data/xx#unsorted.sam test.out/xx#unsorted.sam
> > >  ../progs/scramble -t4 -r ./data/xx.fa ./data/xx#unsorted.sam test.out/xx#unsorted.full.cram
> > > scramble: cram_codecs.c:1441: cram_huffman_encode_init: Assertion `hi->data.i > 0' failed.
> > > Aborted
> > > FAIL scram_mt.test (exit status: 1)
> 
> Rob Davies figured this one out and it's fixed upstream in commit
> 242cd6b.
> 
> The bug affected 32-bit systems, leading to uninitialised memory
> accesses in the hash table code.
> 
> I'm hoping this covers all the recently detected io_lib bugs. (This
> isn't a recent bug - it's been there for years!)
> 
> James
> 
> -- 
> James Bonfield (jkb at sanger.ac.uk)
> The Sanger Institute, Hinxton, Cambs, CB10 1SA
> 
> 
> -- 
>  The Wellcome Sanger Institute is operated by Genome Research 
>  Limited, a charity registered in England with number 1021457 and a 
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>  office is 215 Euston Road, London, NW1 2BE. 
> 

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