[Debian-med-packaging] Bug#909714: gff2aplot: Please provide autopkgtest

[Andreas Tille]

Control: tags -1 pending

I wrote an autopkgtest which uncovered actual bugs in the software.  One
was (hopefully - reviews welcome) fixed[1]

The test suite exposes some other errors - the output is

cp: cannot stat 'taf6.mmhs.genomic.tblastx.png': No such file or directory
mogrify: unable to open image `taf6.mmhs.genomic.tblastx.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
cp: cannot stat 'taf6.mmhs.genomic.tblastx.aplot.png': No such file or directory
mogrify: unable to open image `taf6.mmhs.genomic.tblastx.aplot.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
cp: cannot stat 'taf6.mmhs.genomic.blastn.aplot_conf.png': No such file or directory
mogrify: unable to open image `taf6.mmhs.genomic.blastn.aplot_conf.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
cp: cannot stat 'taf6.mmhs.genomic.tblastx.aplot_conf.png': No such file or directory
mogrify: unable to open image `taf6.mmhs.genomic.tblastx.aplot_conf.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
cp: cannot stat 'taf6.mmhs.genomic.blast.merge.png': No such file or directory
mogrify: unable to open image `taf6.mmhs.genomic.blast.merge.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
cp: cannot stat 'taf6.mmhs.genomic.blast.merge_conf.png': No such file or directory
mogrify: unable to open image `taf6.mmhs.genomic.blast.merge_conf.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
'taf6.mmhs.genomic.blastn.png' -> 'taf6.mmhs.genomic.blastn.s.png'
'taf6.mmhs.genomic.blastn.aplot.png' -> 'taf6.mmhs.genomic.blastn.aplot.s.png'
Some errors were found in logfiles
taf6.mmhs.genomic.blast.merge.log:Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 1737, <THIS> line 12.
taf6.mmhs.genomic.blast.merge_conf.log:Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 1737.
taf6.mmhs.genomic.blastn.aplot.log:Redundant argument in sprintf at /usr/bin/gff2aplot line 3674.
taf6.mmhs.genomic.blastn.aplot.log:Use of uninitialized value $_[1] in string at /usr/bin/gff2aplot line 3734, <THIS> line 1.
taf6.mmhs.genomic.blastn.aplot_conf.log:Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 1737, <THIS> line 12.
taf6.mmhs.genomic.blastn.log:Redundant argument in sprintf at /usr/bin/gff2aplot line 3674.
taf6.mmhs.genomic.blastn.log:Use of uninitialized value $_[1] in string at /usr/bin/gff2aplot line 3734, <THIS> line 1.
taf6.mmhs.genomic.tblastx.aplot.log:Redundant argument in sprintf at /usr/bin/gff2aplot line 3674.
taf6.mmhs.genomic.tblastx.aplot.log:Use of uninitialized value $_[1] in string at /usr/bin/gff2aplot line 3734, <THIS> line 1.
taf6.mmhs.genomic.tblastx.aplot.log:Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 2934.
taf6.mmhs.genomic.tblastx.aplot_conf.log:Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 1737, <THIS> line 12.
taf6.mmhs.genomic.tblastx.aplotgff.log:Can't open taf6.mmhs.genomic.tblastx: No such file or directory at /usr/bin/parseblast line 889.
taf6.mmhs.genomic.tblastx.log:Redundant argument in sprintf at /usr/bin/gff2aplot line 3674.
taf6.mmhs.genomic.tblastx.log:Use of uninitialized value $_[1] in string at /usr/bin/gff2aplot line 3734, <THIS> line 1.
taf6.mmhs.genomic.tblastx.log:Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 2934.
PostScript file ./taf6.mmhs.genomic.blast.merge.ps has zero bytes.
PostScript file ./taf6.mmhs.genomic.tblastx.aplot.ps has zero bytes.
PostScript file ./taf6.mmhs.genomic.blast.merge_conf.ps has zero bytes.
PostScript file ./taf6.mmhs.genomic.tblastx.ps has zero bytes.
PostScript file ./taf6.mmhs.genomic.tblastx.aplot_conf.ps has zero bytes.
PostScript file ./taf6.mmhs.genomic.blastn.aplot_conf.ps has zero bytes.
convert: unable to open image `*.s.png': No such file or directory @ error/blob.c/OpenBlob/2874.
convert: image file does not contain any image data `*.s.png' @ error/vid.c/ReadVIDImage/208.
convert: no images defined `splicesites.summary.png' @ error/convert.c/ConvertImageCommand/3258.

This should be fixed before uploading.

Kind regards

       Andreas.


[1] https://salsa.debian.org/med-team/gff2aplot/blob/master/debian/patches/perl_5.28.patch

-- 
http://fam-tille.de