[Debian-med-packaging] Bug#917495: hhsuite: FTBFS ('ffsort_index' was not declared in this scope)

[Santiago Vila]

Package: src:hhsuite
Version: 3.0~beta3+dfsg-1
Severity: serious
Tags: ftbfs

Dear maintainer:

I tried to build this package in buster but it failed:

--------------------------------------------------------------------------------
[...]
 debian/rules build-indep
dh build-indep --builddirectory=mybuild
   dh_update_autotools_config -i -O--builddirectory=mybuild
   dh_autoreconf -i -O--builddirectory=mybuild
   dh_auto_configure -i -O--builddirectory=mybuild
	cd mybuild && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu ..
-- The CXX compiler identification is GNU 8.2.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Compiler is GNU 

[... snipped ...]

make[1]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg'
dh_auto_build -- NO_PNG=1
	cd mybuild && make -j1 NO_PNG=1
make[2]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
/usr/bin/cmake -S"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg" -B"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild" --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/CMakeFiles" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/CMakeFiles/progress.marks"
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
make -f src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/build.make src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
cd "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/src" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/DependInfo.cmake" --color=
Scanning dependencies of target A3M_COMPRESS_OBJECT
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
make -f src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/build.make src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
[  1%] Building CXX object src/CMakeFiles/A3M_COMPRESS_OBJECT.dir/a3m_compress.cpp.o
cd "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/src" && /usr/bin/c++  -DOPENMP -DSSE -I"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src" -I"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/cs" -I"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild"  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -march=native -msse4.2 -mfpmath=sse -fopenmp -fno-strict-aliasing   -o CMakeFiles/A3M_COMPRESS_OBJECT.dir/a3m_compress.cpp.o -c "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/a3m_compress.cpp"
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
[  1%] Built target A3M_COMPRESS_OBJECT
make -f src/CMakeFiles/a3m_database_filter.dir/build.make src/CMakeFiles/a3m_database_filter.dir/depend
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
cd "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/src" "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/src/CMakeFiles/a3m_database_filter.dir/DependInfo.cmake" --color=
Scanning dependencies of target a3m_database_filter
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
make -f src/CMakeFiles/a3m_database_filter.dir/build.make src/CMakeFiles/a3m_database_filter.dir/build
make[4]: Entering directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
[  2%] Building CXX object src/CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o
cd "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild/src" && /usr/bin/c++  -DOPENMP -DSSE -I"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src" -I"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/cs" -I"/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild"  -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -march=native -msse4.2 -mfpmath=sse -fopenmp -fno-strict-aliasing   -o CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o -c "/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/a3m_database_filter.cpp"
/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/a3m_database_filter.cpp: In function 'int main(int, char**)':
/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/a3m_database_filter.cpp:206:3: error: 'ffsort_index' was not declared in this scope
   ffsort_index(oa3mIndexFile.c_str());
   ^~~~~~~~~~~~
/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/src/a3m_database_filter.cpp:206:3: note: suggested alternative: 'ffindex_index'
   ffsort_index(oa3mIndexFile.c_str());
   ^~~~~~~~~~~~
   ffindex_index
make[4]: *** [src/CMakeFiles/a3m_database_filter.dir/build.make:66: src/CMakeFiles/a3m_database_filter.dir/a3m_database_filter.cpp.o] Error 1
make[4]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
make[3]: *** [CMakeFiles/Makefile2:132: src/CMakeFiles/a3m_database_filter.dir/all] Error 2
make[3]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
make[2]: *** [Makefile:166: all] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg/mybuild'
dh_auto_build: cd mybuild && make -j1 NO_PNG=1 returned exit code 2
make[1]: *** [debian/rules:39: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/hhsuite-3.0~beta3+dfsg'
make: *** [debian/rules:42: build-indep] Error 2
dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit status 2
--------------------------------------------------------------------------------

The build was made in my autobuilder with "dpkg-buildpackage -A"
but it also fails here:

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/hhsuite.html

where you can get a full build log if you need it.

If this is really a bug in one of the build-depends, please use reassign and affects,
so that this is still visible in the BTS web page for this package.

Thanks.