[Debian-med-packaging] Bug#917693: python-skbio: FTBFS: dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13

[Lucas Nussbaum]

Source: python-skbio
Version: 0.5.5-1
Severity: serious
Justification: FTBFS on amd64
Tags: buster sid
Usertags: ftbfs-20181229 ftbfs-buster

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_build
> I: pybuild base:217: /usr/bin/python3 setup.py build 
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
> copying skbio/workflow.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
> copying skbio/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
> copying skbio/test.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
> copying skbio/_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/benchmarks
> copying benchmarks/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/benchmarks
> copying benchmarks/benchmarks.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/benchmarks
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
> copying skbio/alignment/_pairwise.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
> copying skbio/alignment/_indexing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
> copying skbio/alignment/_tabular_msa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
> copying skbio/alignment/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
> copying skbio/alignment/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
> copying skbio/metadata/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
> copying skbio/metadata/_testing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
> copying skbio/metadata/_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
> copying skbio/metadata/_interval.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
> copying skbio/metadata/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> copying skbio/util/_decorator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> copying skbio/util/_misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> copying skbio/util/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> copying skbio/util/_testing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> copying skbio/util/_warning.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> copying skbio/util/_exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree
> copying skbio/tree/_majority_rule.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree
> copying skbio/tree/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree
> copying skbio/tree/_nj.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree
> copying skbio/tree/_tree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree
> copying skbio/tree/_exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tests
> copying skbio/tests/test_workflow.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tests
> copying skbio/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tests
> copying skbio/tests/test_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/_iosources.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/_fileobject.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/_warning.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/_exception.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> copying skbio/io/util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> copying skbio/stats/power.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> copying skbio/stats/_subsample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> copying skbio/stats/_misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> copying skbio/stats/gradient.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> copying skbio/stats/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> copying skbio/stats/composition.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/distance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_nucleotide_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_rna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_protein.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_grammared_sequence.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_sequence.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_repr.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> copying skbio/sequence/_genetic_code.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
> copying skbio/diversity/_driver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
> copying skbio/diversity/_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
> copying skbio/diversity/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
> copying skbio/diversity/_block.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/tests
> copying skbio/alignment/tests/test_pairwise.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/tests
> copying skbio/alignment/tests/test_ssw.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/tests
> copying skbio/alignment/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/tests
> copying skbio/alignment/tests/test_tabular_msa.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/_lib
> copying skbio/alignment/_lib/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/_lib
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/tests
> copying skbio/metadata/tests/test_intersection.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/tests
> copying skbio/metadata/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/tests
> copying skbio/metadata/tests/test_interval.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/tests
> copying skbio/metadata/tests/test_mixin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/tests
> copying skbio/util/tests/test_testing.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/tests
> copying skbio/util/tests/test_misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/tests
> copying skbio/util/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/tests
> copying skbio/util/tests/test_decorator.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree/tests
> copying skbio/tree/tests/test_tree.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree/tests
> copying skbio/tree/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree/tests
> copying skbio/tree/tests/test_nj.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree/tests
> copying skbio/tree/tests/test_majority_rule.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/tree/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/qseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/lsmat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/clustal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/emptyfile.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/blast7.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/ordination.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/embl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/_blast.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/phylip.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/stockholm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/_sequence_feature_vocabulary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/blast6.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/newick.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/gff3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> copying skbio/io/format/genbank.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests
> copying skbio/io/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests
> copying skbio/io/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests
> copying skbio/io/tests/test_iosources.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests
> copying skbio/io/tests/test_registry.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_embl.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_ordination.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_newick.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_blast7.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_qseq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_gff3.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_stockholm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_genbank.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_emptyfile.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_fasta.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_blast6.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_clustal.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_phylip.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_lsmat.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> copying skbio/io/format/tests/test_fastq.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/_utils.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/_ordination_results.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/_correspondence_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/_redundancy_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> copying skbio/stats/ordination/_principal_coordinate_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> copying skbio/stats/tests/test_gradient.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> copying skbio/stats/tests/test_power.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> copying skbio/stats/tests/test_composition.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> copying skbio/stats/tests/test_misc.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> copying skbio/stats/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> copying skbio/stats/tests/test_subsample.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/_permanova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/_permdisp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/_anosim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/_bioenv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> copying skbio/stats/distance/_mantel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/evolve
> copying skbio/stats/evolve/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/evolve
> copying skbio/stats/evolve/_hommola.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/evolve
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/test_ordination_results.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/test_bioenv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/test_permdisp.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/test_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/test_anosim.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/test_mantel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> copying skbio/stats/distance/tests/test_permanova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/evolve/tests
> copying skbio/stats/evolve/tests/test_hommola.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/evolve/tests
> copying skbio/stats/evolve/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/evolve/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_sequence.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_nucleotide_sequences.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_grammared_sequence.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_distance.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_rna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_genetic_code.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_dna.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> copying skbio/sequence/tests/test_protein.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/tests
> copying skbio/diversity/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/tests
> copying skbio/diversity/tests/test_util.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/tests
> copying skbio/diversity/tests/test_block.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/tests
> copying skbio/diversity/tests/test_driver.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta
> copying skbio/diversity/beta/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta
> copying skbio/diversity/beta/_unifrac.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/_ace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/_chao1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/_gini.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/_lladser.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> copying skbio/diversity/alpha/_faith_pd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests
> copying skbio/diversity/beta/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests
> copying skbio/diversity/beta/tests/test_unifrac.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/test_chao1.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/test_gini.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/test_lladser.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/test_base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/test_ace.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> copying skbio/diversity/alpha/tests/test_faith_pd.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/example_file.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/example_file.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/big5_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/big5_file.gz -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/real_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/real_file_2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/example_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> copying skbio/io/tests/data/big5_file.bz2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_custom_minimal -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_vtab.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_data_only -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_rna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_diff_ids.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/gff3_bad_missing_directive -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_multiple_references -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_single_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_metadata_only -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error9 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error16 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_single_seq_long -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_single_record_upper -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_del.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_invalid_x -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_constructed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_no_qual.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error22 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_short_qual.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_max_width_1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_default_multi_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error13 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/gff3_multi_record -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_single_record_lower -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_multi_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_feature_level_record -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_null.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/tsv_10_fields -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_multiple_trees -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_tabs.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_custom_multi_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_example3_scores -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/gff3_single_record -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/gff3_dna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/legacy9_mixed_nans -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_invalid_lane -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error8 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_max_width_5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_multi_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_runon_references -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/legacy9_and_blast7_default -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_single_record_simple -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error7 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_gibberish -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_custom_single_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_2_seqs_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error20 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_different_padding -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_escape.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_duplicate_gc -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error24 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_variable_length_ids -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_max_width_1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_two_chunks -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_missing_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_minimal -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_single_record -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_ws_lines_between_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error23 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_missing_locus_name -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_single_record_upper -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/empty -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error4 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_invalid_column_types -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_legacy_format -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_invalid_data_type -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_duplicate_gr -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_multi_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/tsv_8_fields -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_missing_reference_items -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_uniprot_record -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error15 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/legacy9_single_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error10 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_malformed_data_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_3_seqs_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_nonstring_labels -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_space.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_custom_minimal -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error18 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_invalid_y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error19 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_multi_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error21 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_invalid_filter -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_invalid_tile -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_blanks_end_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_single_seq_sanger -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error12 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_blank_lines -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_default_single_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_max_width_5 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_missing_footer -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error6 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_multiple_msa -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_blank_lines -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error11 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_missing_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error17 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/legacy9_multi_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/whitespace_only -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_no_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_single_record_lower -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_custom_multi_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/genbank_single_record -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error14 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_single_reference -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_default_single_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_extensive -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_missing_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_10_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_default_multi_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_single_seq_short -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_all_data_types -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_error3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qseq_invalid_read -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_long_qual.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_invalid_no_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_qual_tab.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_blank_lines_between_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_double_seq.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_custom_single_line -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/ordination_example2_scores -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/phylip_dna_3_seqs -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_invalid_missing_header -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/stockholm_extensive_mixed -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_double_qual.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/error_spaces.fastq -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> copying skbio/io/format/tests/data/blast7_invalid_no_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/cr_no_data_raw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/vr_raw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/vr_real_raw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/gr_w_msg_raw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/vr_out -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/vr_real_out -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/cr_no_data_out -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/gr_w_msg_out -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/cr_data_raw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/cr_data_out -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/gr_wo_msg_raw -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> copying skbio/stats/tests/data/gr_wo_msg_out -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_sample_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_X -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/varechem.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/varespec.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_skbio -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_X -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_Y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example2_Y -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/L&L_CA_data -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/exp_results.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/dm3.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/dm.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/df.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/df_extra_column.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/dm4.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/dm_reordered.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> copying skbio/stats/distance/tests/data/dm2.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/distance/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/beta/tests/data/qiime-191-tt
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests/data
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt
> copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt
> copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt
> copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt
> copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/tests/data/qiime-191-tt
> running build_ext
> building 'skbio.metadata._intersection' extension
> creating build
> creating build/temp.linux-amd64-3.7
> creating build/temp.linux-amd64-3.7/skbio
> creating build/temp.linux-amd64-3.7/skbio/metadata
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/metadata/_intersection.c -o build/temp.linux-amd64-3.7/skbio/metadata/_intersection.o
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/skbio/metadata/_intersection.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/metadata/_intersection.cpython-37m-x86_64-linux-gnu.so
> building 'skbio.stats.__subsample' extension
> creating build/temp.linux-amd64-3.7/skbio/stats
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/stats/__subsample.c -o build/temp.linux-amd64-3.7/skbio/stats/__subsample.o
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from skbio/stats/__subsample.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it with " \
>   ^~~~~~~
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from skbio/stats/__subsample.c:250:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
>  _import_array(void)
>  ^~~~~~~~~~~~~
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/skbio/stats/__subsample.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/__subsample.cpython-37m-x86_64-linux-gnu.so
> building 'skbio.alignment._ssw_wrapper' extension
> creating build/temp.linux-amd64-3.7/skbio/alignment
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/alignment/_ssw_wrapper.c -o build/temp.linux-amd64-3.7/skbio/alignment/_ssw_wrapper.o
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from skbio/alignment/_ssw_wrapper.c:256:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it with " \
>   ^~~~~~~
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from skbio/alignment/_ssw_wrapper.c:256:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
>  _import_array(void)
>  ^~~~~~~~~~~~~
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/skbio/alignment/_ssw_wrapper.o -lssw -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/_ssw_wrapper.cpython-37m-x86_64-linux-gnu.so
> building 'skbio.diversity._phylogenetic' extension
> creating build/temp.linux-amd64-3.7/skbio/diversity
> x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.7m -c skbio/diversity/_phylogenetic.c -o build/temp.linux-amd64-3.7/skbio/diversity/_phylogenetic.o
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from skbio/diversity/_phylogenetic.c:242:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
>  #warning "Using deprecated NumPy API, disable it with " \
>   ^~~~~~~
> In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
>                  from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
>                  from skbio/diversity/_phylogenetic.c:242:
> /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: '_import_array' defined but not used [-Wunused-function]
>  _import_array(void)
>  ^~~~~~~~~~~~~
> x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/skbio/diversity/_phylogenetic.o -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/_phylogenetic.cpython-37m-x86_64-linux-gnu.so
> PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build \
> 	http_proxy='127.0.0.1:9' \
> 	python3 `which sphinx-build` -b html -d doc/build/doctrees doc/source doc/build/html
> Running Sphinx v1.7.9
> making output directory...
> loading pickled environment... not yet created
> [autosummary] generating autosummary for: alignment.rst, diversity.rst, index.rst, io.rst, metadata.rst, sequence.rst, stats.rst, tree.rst, util.rst, workflow.rst
> [autosummary] generating autosummary for: /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.AlignmentStructure.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.StripedSmithWaterman.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.TabularMSA.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.global_pairwise_align.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.global_pairwise_align_nucleotide.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.global_pairwise_align_protein.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.local_pairwise_align.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.local_pairwise_align_nucleotide.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.local_pairwise_align_protein.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.local_pairwise_align_ssw.rst, ..., /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.assert_data_frame_almost_equal.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.assert_ordination_results_equal.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.cardinal_to_ordinal.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.classproperty.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.find_duplicates.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.get_data_path.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.safe_md5.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.Workflow.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.method.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.requires.rst
> [autosummary] generating autosummary for: /<<PKGBUILDDIR>>/doc/source/generated/generated/skbio.io.util.open.rst, /<<PKGBUILDDIR>>/doc/source/generated/generated/skbio.io.util.open_file.rst, /<<PKGBUILDDIR>>/doc/source/generated/generated/skbio.io.util.open_files.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.AlignmentStructure.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.AlignmentStructure.is_zero_based.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.AlignmentStructure.set_zero_based.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.StripedSmithWaterman.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.TabularMSA.__bool__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.TabularMSA.__contains__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.alignment.TabularMSA.__copy__.rst, ..., /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.classproperty.deleter.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.classproperty.getter.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.util.classproperty.setter.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.Workflow.__call__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.Workflow.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.Workflow.initialize_state.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.method.__call__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.method.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.requires.__call__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.workflow.requires.__init_subclass__.rst
> [autosummary] generating autosummary for: /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.Format.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.Format.reader.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.Format.sniffer.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.Format.writer.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.IORegistry.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.IORegistry.add_format.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.IORegistry.create_format.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.IORegistry.get_reader.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.IORegistry.get_sniffer.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.io.registry.IORegistry.get_writer.rst, ..., /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.gradient.GroupResults.to_files.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.gradient.TrajectoryGradientANOVA.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.gradient.TrajectoryGradientANOVA.get_trajectories.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.gradient.WindowDifferenceGradientANOVA.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.gradient.WindowDifferenceGradientANOVA.get_trajectories.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.ordination.OrdinationResults.__init_subclass__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.ordination.OrdinationResults.__str__.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.ordination.OrdinationResults.plot.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.ordination.OrdinationResults.read.rst, /<<PKGBUILDDIR>>/doc/source/generated/skbio.stats.ordination.OrdinationResults.write.rst
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> building [mo]: targets for 0 po files that are out of date
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> 
> generating indices... genindex py-modindex
> writing additional pages... search
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> 
> copying static files... done
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> dumping search index in English (code: en) ... done
> dumping object inventory... done
> build succeeded, 12 warnings.
> 
> The HTML pages are in doc/build/html.
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.011492611219229464 and the largest is 16.021722090908206.
>   RuntimeWarning
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build; python3.7 -m nose -v 
> test_compute_score_and_traceback_matrices (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_compute_score_and_traceback_matrices_invalid (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_compute_substitution_score (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_first_largest (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_custom_alphabet (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_custom_alphabet_nondegenerate_chars (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_dtype_mismatch (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_invalid_type (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_nucleotide (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_nucleotide_invalid_dtype (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_nucleotide_penalize_terminal_gaps (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_protein (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_protein_invalid_dtype (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_global_pairwise_align_protein_penalize_terminal_gaps (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_init_matrices_nw (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_init_matrices_sw (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_local_pairwise_align_custom_alphabet (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_local_pairwise_align_custom_alphabet_nondegenerate_chars (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_local_pairwise_align_invalid_type (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_local_pairwise_align_nucleotide (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_local_pairwise_align_protein (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_local_pairwise_align_type_mismatch (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_make_identity_substitution_matrix (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_nucleotide_aligners_use_substitution_matrices (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_traceback (skbio.alignment.tests.test_pairwise.PairwiseAlignmentTests) ... ok
> test_invalid_type (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok
> test_kwargs_are_usable (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok
> test_same_as_using_StripedSmithWaterman_object_DNA (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok
> test_same_as_using_StripedSmithWaterman_object_Protein (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok
> test_type_mismatch (skbio.alignment.tests.test_ssw.TestAlignStripedSmithWaterman) ... ok
> test__get_aligned_sequences (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok
> test_aligned_query_target_sequence (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok
> test_aligned_query_target_sequence_with_suppressed_sequences (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok
> test_is_zero_based_returns_true_if_index_base_is_zero (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok
> test_set_zero_based_changes_the_index_base (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok
> test_works_for_dot_and_square_bracket_access (skbio.alignment.tests.test_ssw.TestAlignmentStructure) ... ok
> test_align_with_N_in_nucleotide_sequence (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_distance_filter_is_used (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_gap_extend_penalty (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_gap_open_penalty (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_match_score (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_matrix_overrides_match_and_mismatch (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_mismatch_score (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_override_skip_babp (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_score_filter_is_used (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_score_only (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_suppress_sequences (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_arg_zero_index_changes_base_of_index_to_0_or_1 (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_lowercase_is_valid_sequence (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_object_is_reusable (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_protein_sequence_is_usable (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_regression_on_instantiation_arguments (skbio.alignment.tests.test_ssw.TestStripedSmithWaterman) ... ok
> test_dtype_mismatch_float (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_dtype_mismatch_rna (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_duplicate_index (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_empty_msa_with_positional_metadata_add_new_positions (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_empty_msa_with_positional_metadata_no_new_positions (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_index_type_change (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_invalid_dtype (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_invalid_minter (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_invalid_minter_index_reset_index_parameter_combos (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_minter_callable (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_multiindex_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_multiindex_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_multiindex_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_multiindex_minter_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_reset_index_bool_cast (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_reset_index_default_index (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_reset_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_reset_index_non_default_index (skbio.alignment.tests.test_tabular_msa.TestAppend) ... ok
> test_default_gap_char (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_different_dtype (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_mixed_gap_characters_as_majority (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_multiple_sequences (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_no_positions (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_single_sequence (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_ties (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_ties_with_gaps (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestConsensus) ... ok
> test_bad_degenerate_mode (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_bad_gap_mode (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_bad_metric (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_column_with_degen_and_gap (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_degenerate_mode_error (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_degenerate_mode_nan (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_error_on_degenerate_w_nan_on_gap (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_gap_mode_error (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_gap_mode_ignore (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_gap_mode_include (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_gap_mode_include_gaps_treated_as_single_char (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_gap_mode_nan (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_shannon_entropy_dna (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_shannon_entropy_protein (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_shannon_entropy_rna (skbio.alignment.tests.test_tabular_msa.TestConservation) ... ok
> test_index_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_metadata_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_no_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_no_override_no_md (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_positional_metadata_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_sequence_override (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_sequence_override_same_seqs (skbio.alignment.tests.test_tabular_msa.TestConstructor) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestContains) ... ok
> test_with_int_labels (skbio.alignment.tests.test_tabular_msa.TestContains) ... ok
> test_with_str_labels (skbio.alignment.tests.test_tabular_msa.TestContains) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestCopy) ... ok
> test_with_index (skbio.alignment.tests.test_tabular_msa.TestCopy) ... ok
> test_with_sequences (skbio.alignment.tests.test_tabular_msa.TestCopy) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestDeepCopy) ... ok
> test_with_index (skbio.alignment.tests.test_tabular_msa.TestDeepCopy) ... ok
> test_with_sequences (skbio.alignment.tests.test_tabular_msa.TestDeepCopy) ... ok
> test_dtype_mismatch_float (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_dtype_mismatch_rna (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_duplicate_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_empty_msa_with_positional_metadata_add_new_positions (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_empty_msa_with_positional_metadata_no_new_positions (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_from_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_from_tabular_msa_index_param_still_required (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_from_tabular_msa_with_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_index_object_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_index_object_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_index_type_change (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_invalid_dtype (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_invalid_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_invalid_minter (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_invalid_minter_index_reset_index_parameter_combos (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_minter_callable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_multiindex_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_multiindex_index_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_multiindex_minter_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_multiindex_minter_non_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_multiple_sequences (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_non_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_bool_cast (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_default_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_empty_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_from_tabular_msa (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_non_default_index (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_reset_index_non_empty_msa_empty_iterable (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_sequences_index_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_single_sequence (skbio.alignment.tests.test_tabular_msa.TestExtend) ... ok
> test_correct_dtype_absolute_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_correct_dtype_absolute_non_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_correct_dtype_relative_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_correct_dtype_relative_non_empty (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_custom_gap_characters (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_default_behavior (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_invalid_axis_int (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_invalid_axis_str (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_no_positions_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_no_positions_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in true_divide
>   gap_freqs /= length
> ok
> test_no_sequences_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_no_sequences_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_position_axis_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_position_axis_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_position_axis_str_and_int_equivalent (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_relative_frequencies_precise (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_sequence_axis_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_sequence_axis_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_sequence_axis_str_and_int_equivalent (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_single_position_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_single_position_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_single_sequence_absolute (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_single_sequence_relative (skbio.alignment.tests.test_tabular_msa.TestGapFrequencies) ... ok
> test_asburd_slice (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bad_fancy_index (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bad_scalar (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bool_index_both_axes (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bool_index_first_axis (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bool_index_second_axis (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bool_index_too_big (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_bool_index_too_small (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_empty_msa_slice (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_msa_slice_all_both_axes (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_msa_slice_all_first_axis (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_tuple_too_big (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_uses_iloc_not_loc (skbio.alignment.tests.test_tabular_msa.TestGetItem) ... ok
> test_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestGetPosition) ... ok
> test_without_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestGetPosition) ... ok
> test_unhashable_object (skbio.alignment.tests.test_tabular_msa.TestHashable) ... ok
> test_unhashable_type (skbio.alignment.tests.test_tabular_msa.TestHashable) ... ok
> test_asburd_slice (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bad_fancy_index (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bad_scalar (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bool_index_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bool_index_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bool_index_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bool_index_too_big (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_bool_index_too_small (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_combo_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_combo_first_axis_only (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_combo_second_axis_only (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_combo_single_axis_natural (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_empty_msa_slice (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_entire_fancy_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_empty_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_empty_both_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_empty_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_empty_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_entire_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_entire_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_out_of_bound (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_out_of_bounds_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_out_of_bounds_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_standard_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_standard_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_fancy_standard_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_forced_axis_no_mutate (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_forced_axis_returns_copy (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_get_scalar_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_get_scalar_out_of_bound_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_get_scalar_out_of_bound_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_get_scalar_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_msa_slice_all_both_axes (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_msa_slice_all_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_scalar_sliced_first_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_scalar_sliced_second_axis (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_tuple_too_big (skbio.alignment.tests.test_tabular_msa.TestILoc) ... ok
> test_invalid_int (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok
> test_invalid_str (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok
> test_negative_int (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok
> test_negative_str (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok
> test_positive_int (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok
> test_positive_str (skbio.alignment.tests.test_tabular_msa.TestIsSequenceAxis) ... ok
> test_method_return_type (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_multiple_positions (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_multiple_positions_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_positions (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_positions_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_positions_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_positions_reverse_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_sequences_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_sequences_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_no_sequences_reverse_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_position_type (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_single_position (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_single_position_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_with_positional_metadata_ignore_metadata (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_with_positional_metadata_reverse (skbio.alignment.tests.test_tabular_msa.TestIterPositions) ... ok
> test_dtype_mismatch (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_duplicate_index_labels (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_inner (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_inner_no_index_overlap_with_positional_metadata_overlap (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_inner_no_positional_metadata_overlap (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_left (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_outer (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_right (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_strict (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_strict_failure_index_mismatch (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_how_strict_failure_positional_metadata_mismatch (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_ignores_metadata (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_invalid_how (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_invalid_other_type (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_no_metadata (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_no_positions (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_no_sequences (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_one_with_positions_one_without_positions (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_outer_join_on_per_sequence_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestJoin) ... ok
> test_asburd_slice (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_assertion_exists_for_future_failure_of_get_sequence_loc (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bad_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/alignment/_tabular_msa.py:1192: FutureWarning: 
> Passing list-likes to .loc or [] with any missing label will raise
> KeyError in the future, you can use .reindex() as an alternative.
> 
> See the documentation here:
> https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike
>   new_seqs = self._seqs.loc[l]
> ok
> test_bad_scalar (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_both_axes (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_first_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_nonscalar_bool_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_scalar_bool_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_second_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_too_big (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_bool_index_too_small (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_categorical_index_nonscalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_categorical_index_scalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_combo_both_axes (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_combo_first_axis_only (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_combo_second_axis_only (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_combo_single_axis_natural (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_complex_single_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_duplicate_index_nonscalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_duplicate_index_scalar_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_empty_msa_slice (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_fancy_index_missing_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_float_index_out_of_order_slice (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_forced_axis_no_mutate (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_forced_axis_returns_copy (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_label_not_exists (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_missing_first_nonscalar_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_msa_slice_all_both_axes (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_msa_slice_all_first_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_multiindex_complex (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_multiindex_complicated_axis (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_multiindex_complicated_axis_empty_selection (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_multiindex_fancy_indexing_incomplete_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_non_multiindex_tuple (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_nonscalar_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_partial_label (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_tuple_fancy_index (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_tuple_too_big (skbio.alignment.tests.test_tabular_msa.TestLoc) ... ok
> test_repr (skbio.alignment.tests.test_tabular_msa.TestRepr) ... ok
> test_bool (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_empty_no_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_empty_with_labels (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_index_length_mismatch_index_object (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_index_length_mismatch_iterable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_invalid_dtype (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_invalid_index_scalar (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_invalid_minter_callable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_minter_and_index_both_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_missing_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_non_empty_no_labels_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_non_empty_with_labels_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_non_iterable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_non_unique_labels (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_not_monomorphic (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_unequal_length (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_unhashable_minter_metadata_key (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_with_multiindex_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_with_multiindex_minter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_works_with_iterator (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_copy_constructor_respects_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_copy_constructor_state_override_with_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_copy_constructor_state_override_with_minter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_copy_constructor_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_copy_constructor_with_minter_and_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_copy_constructor_without_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_dtype (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_eq_and_ne (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_eq_constructed_from_different_iterables_compare_equal (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_eq_default_index_and_equivalent_provided_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_eq_ignores_minter_str_and_lambda (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_eq_minter_and_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_from_dict_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_from_dict_invalid_input (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_from_dict_multiple_sequences (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_from_dict_single_sequence (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_from_dict_to_dict_roundtrip (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_deleter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_getter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_getter_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_mixed_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_setter_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_setter_length_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_setter_non_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_setter_non_unique_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_setter_preserves_range_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_index_setter_tuples (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_iter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_len (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_mapping_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_minter_and_mapping_both_provided (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_non_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_non_unique_existing_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_non_unique_new_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_to_multiindex_with_mapping (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_to_multiindex_with_minter (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_with_mapping_callable (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_with_mapping_dict_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_with_mapping_dict_subset (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reassign_index_with_mapping_dict_superset (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_reversed (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_shape (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_already_sorted (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_default_index_descending (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_empty_on_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_multiindex (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_multiindex_with_level (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_multiple_sequences_on_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_on_key_with_all_repeats (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_on_labels_with_some_repeats (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_on_unorderable_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_reverse_sorted (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_sort_single_sequence_on_msa_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_to_dict_default_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_to_dict_duplicate_labels (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_to_dict_falsey_msa (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_to_dict_non_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSA) ... ok
> test_constructor_handles_missing_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_constructor_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_constructor_makes_shallow_copy_of_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_constructor_no_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_constructor_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_copy_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_copy_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_copy_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_deepcopy_memo_is_respected (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_deepcopy_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_deepcopy_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_deepcopy_with_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_eq (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_eq_handles_missing_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_eq_missing_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_has_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_metadata_deleter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_metadata_getter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_metadata_getter_no_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_metadata_setter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_metadata_setter_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_metadata_setter_makes_shallow_copy (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_ne (skbio.alignment.tests.test_tabular_msa.TestTabularMSAMetadata) ... ok
> test_constructor_handles_missing_positional_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_invalid_positional_metadata_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... /usr/lib/python3/dist-packages/pandas/core/frame.py:406: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working
>   elif isinstance(data, collections.Iterator):
> ok
> test_constructor_makes_shallow_copy_of_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_no_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_positional_metadata_len_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_with_positional_metadata_custom_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_with_positional_metadata_int64_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_with_positional_metadata_len_greater_than_one (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_with_positional_metadata_len_one (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_with_positional_metadata_len_zero (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_constructor_with_positional_metadata_multiple_columns (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_copy_positional_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_copy_positional_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_copy_preserves_range_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_copy_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_deepcopy_memo_is_respected (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_deepcopy_positional_metadata_empty (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_deepcopy_positional_metadata_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_deepcopy_preserves_range_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_deepcopy_with_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_eq_basic (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_eq_from_different_source (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_eq_handles_missing_positional_metadata_efficiently (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_eq_missing_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_has_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_ne_len_greater_than_zero (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_ne_len_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_ne_len_zero (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_deleter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_getter (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_getter_no_positional_metadata (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_getter_set_column_array (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_getter_set_column_series (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_data_frame (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_int64_index (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_invalid_type (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_len_mismatch (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_makes_shallow_copy (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_none (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_positional_metadata_setter_pandas_consumable (skbio.alignment.tests.test_tabular_msa.TestTabularMSAPositionalMetadata) ... ok
> test_ace (skbio.diversity.alpha.tests.test_ace.AceTests) ... ok
> test_ace_only_rare_singletons (skbio.diversity.alpha.tests.test_ace.AceTests) ... ok
> test_berger_parker_d (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_brillouin_d (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_dominance (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_doubles (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_enspie (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_esty_ci (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_fisher_alpha (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_goods_coverage (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_heip_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_kempton_taylor_q (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_margalef (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_mcintosh_d (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_mcintosh_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_menhinick (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_michaelis_menten_fit (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_observed_otus (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_osd (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_pielou_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/_base.py:793: RuntimeWarning: invalid value encountered in double_scalars
>   return shannon(counts, base=np.e) / np.log(observed_otus(counts))
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/_base.py:869: RuntimeWarning: invalid value encountered in true_divide
>   freqs = counts / counts.sum()
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/diversity/alpha/_base.py:793: RuntimeWarning: divide by zero encountered in log
>   return shannon(counts, base=np.e) / np.log(observed_otus(counts))
> ok
> test_robbins (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_shannon (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_simpson (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_simpson_e (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_singles (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_strong (skbio.diversity.alpha.tests.test_base.BaseTests) ... ok
> test_chao1 (skbio.diversity.alpha.tests.test_chao1.Chao1Tests) ... ok
> test_chao1_ci (skbio.diversity.alpha.tests.test_chao1.Chao1Tests) ... ok
> test_chao1_var (skbio.diversity.alpha.tests.test_chao1.Chao1Tests) ... ok
> test_faith_pd (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_all_observed (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_extra_tips (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_invalid_input (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_minimal (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_none_observed (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_qiime_tiny_test (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_faith_pd_root_not_observed (skbio.diversity.alpha.tests.test_faith_pd.FaithPDTests) ... ok
> test_gini_index (skbio.diversity.alpha.tests.test_gini.GiniTests) ... ok
> test_lorenz_curve (skbio.diversity.alpha.tests.test_gini.GiniTests) ... ok
> test_lorenz_curve_integrator (skbio.diversity.alpha.tests.test_gini.GiniTests) ... ok
> test_expand_counts (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> test_get_interval_for_r_new_otus (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> lladser_ci estimate using defaults contains p with 95% prob ... ok
> lladser_ci estimate using f=3 contains p with 95% prob ... ok
> test_lladser_ci_from_r (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> test_lladser_ci_from_r_invalid_input (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> lladser_ci returns nan if sample is too short to make an estimate ... ok
> test_lladser_ci_series_exact (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> test_lladser_ci_series_random (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> lladser_pe returns point estimates within the expected variance ... ok
> test_lladser_point_estimates (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> test_lladser_point_estimates_invalid_r (skbio.diversity.alpha.tests.test_lladser.LladserTests) ... ok
> test_invalid_input (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_extra_tips (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_minimal_trees (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_otus_out_of_order (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_root_not_observed (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_unifrac (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_unifrac_identity (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_unifrac_non_overlapping (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_unifrac_pycogent_adapted (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_unifrac_symmetry (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_unweighted_unifrac_zero_counts (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_extra_tips (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_minimal_trees (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_normalized_root_not_observed (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_otus_out_of_order (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_root_not_observed (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_branch_correction (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_identity (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_identity_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_non_overlapping (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_non_overlapping_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_pycogent_adapted (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_symmetry (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_symmetry_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_zero_counts (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_weighted_unifrac_zero_counts_normalized (skbio.diversity.beta.tests.test_unifrac.UnifracTests) ... ok
> test_block_beta_diversity (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/_decorator.py:257: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading.
>   SkbioDeprecationWarning)
> ok
> test_block_compute (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_block_kwargs (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_block_party_notree (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_block_party_tree (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_generate_id_blocks (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_map (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_pairs_to_compute_rids_are_cids (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_pairs_to_compute_rids_are_not_cids (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_pairs_to_compute_rids_overlap_cids (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_reduce (skbio.diversity.tests.test_block.ParallelBetaDiversity) ... ok
> test_empty (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_faith_pd (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_input_types (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_invalid_input (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_invalid_input_phylogenetic (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_no_ids (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_observed_otus (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_optimized (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_single_count_vector (skbio.diversity.tests.test_driver.AlphaDiversityTests) ... ok
> test_alt_pairwise_func (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_braycurtis (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_empty (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_euclidean (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_input_types (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_invalid_input (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_invalid_input_phylogenetic (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_qualitative_bug_issue_1549 (skbio.diversity.tests.test_driver.BetaDiversityTests) ... /usr/lib/python3/dist-packages/sklearn/utils/validation.py:595: DataConversionWarning: Data with input dtype int64 was converted to bool by check_pairwise_arrays.
>   warnings.warn(msg, DataConversionWarning)
> ok
> test_scipy_kwargs (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_unweighted_unifrac (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_weighted_unifrac (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_weighted_unifrac_normalized (skbio.diversity.tests.test_driver.BetaDiversityTests) ... ok
> test_get_alpha_diversity_metrics (skbio.diversity.tests.test_driver.MetricGetters) ... ok
> test_get_alpha_diversity_metrics_sorted (skbio.diversity.tests.test_driver.MetricGetters) ... ok
> test_get_beta_diversity_metrics (skbio.diversity.tests.test_driver.MetricGetters) ... ok
> test_get_beta_diversity_metrics_sorted (skbio.diversity.tests.test_driver.MetricGetters) ... ok
> test_duplicate_pairs (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/_decorator.py:257: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading.
>   SkbioDeprecationWarning)
> ok
> test_duplicate_transpose_pairs (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_euclidean (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_id_pairs_as_iterable (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_pairs_not_subset (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_self_self_pair (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_unusable_metric (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_unweighted_unifrac_partial (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_weighted_unifrac_partial_full (skbio.diversity.tests.test_driver.TestPartialBetaDiversity) ... ok
> test_validate_counts_matrix (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_validate_counts_matrix_negative_counts (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_validate_counts_matrix_suppress_cast (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_validate_counts_matrix_unequal_lengths (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_validate_counts_vector (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_validate_counts_vector_invalid_input (skbio.diversity.tests.test_util.ValidationTests) ... /usr/lib/python3/dist-packages/numpy/lib/type_check.py:279: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison
>   return imag(x) == 0
> ok
> test_validate_otu_ids_and_tree (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_validate_otu_ids_and_tree_invalid_input (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_vectorize_counts_and_tree (skbio.diversity.tests.test_util.ValidationTests) ... ok
> test_custom_phred_offset (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_empty_qual_str (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_illumina13_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_illumina18_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_missing_variant_and_phred_offset (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_sanger_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_solexa_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_unrecognized_variant (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_variant_and_phred_offset_provided (skbio.io.format.tests.test_base.PhredDecoderTests) ... ok
> test_custom_phred_offset (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_illumina13_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_illumina18_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_missing_variant_and_phred_offset (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_no_phred_scores (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_sanger_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_solexa_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_unrecognized_variant (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_variant_and_phred_offset_provided (skbio.io.format.tests.test_base.PhredEncoderTests) ... ok
> test_empty_sequence (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_empty_str_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_missing_quality_scores (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_multi_char_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_newline_character_in_description_newline_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_newline_character_in_id_whitespace_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_no_replacement (skbio.io.format.tests.test_base.TestFormatFASTALikeRecords) ... ok
> test_seq_num_just_right (skbio.io.format.tests.test_base.TestGetNthSequence) ... ok
> test_seq_num_too_big (skbio.io.format.tests.test_base.TestGetNthSequence) ... ok
> test_seq_num_too_small (skbio.io.format.tests.test_base.TestGetNthSequence) ... ok
> test_description_only (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok
> test_id_and_description (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok
> test_id_only (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok
> test_no_id_or_description (skbio.io.format.tests.test_base.TestParseFASTALikeHeader) ... ok
> test_custom_and_default_passed_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_custom_valid_multi_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_custom_valid_single_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_default_valid_multi_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_default_valid_single_line (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_different_data_in_same_column (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_no_columns_passed_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_valid_minimal (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_valid_nan_handling (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_wrong_amount_of_columns_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_wrong_column_name_error (skbio.io.format.tests.test_blast6.TestBlast6Reader) ... ok
> test_negatives (skbio.io.format.tests.test_blast7.TestBLAST7Sniffer) ... ok
> test_positives (skbio.io.format.tests.test_blast7.TestBLAST7Sniffer) ... ok
> test_custom_valid_minimal (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_custom_valid_mixed_nans (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_custom_valid_multi_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_custom_valid_single_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_default_valid_mixed_output (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_default_valid_multi_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_default_valid_single_line (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_differing_fields_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_legacy9_valid_mixed_nans (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_no_data_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_unrecognized_field_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_wrong_amount_of_columns_error (skbio.io.format.tests.test_blast7.TestBlast7Reader) ... ok
> test_check_lengh (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok
> test_delete_trailing_number (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok
> test_is_clustal_seq_line (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok
> test_label_line_parser (skbio.io.format.tests.test_clustal.ClustalHelperTests) ... ok
> test_clustal_sniffer_invalid_files (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_clustal_sniffer_valid_files (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_duplicate_labels (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_invalid_lengths (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_invalid_tabular_msa_to_clustal_and_clustal_to_tabular_msa (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_no_constructor (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_tabular_msa_to_clustal_with_bad_input (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_tabular_msa_to_clustal_with_empty_input (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_valid_tabular_msa_to_clustal_and_clustal_to_tabular_msa (skbio.io.format.tests.test_clustal.ClustalIOTests) ... ok
> test_embl_to_gb (skbio.io.format.tests.test_embl.Convertertest) ... ERROR
> test_gb_to_embl (skbio.io.format.tests.test_embl.Convertertest) ... ERROR
> test_constructed_sequences (skbio.io.format.tests.test_embl.ReaderTests) ... ok
> test_embl_to_dna (skbio.io.format.tests.test_embl.ReaderTests) ... ERROR
> test_embl_to_generator (skbio.io.format.tests.test_embl.ReaderTests) ... ERROR
> test_embl_to_generator_single (skbio.io.format.tests.test_embl.ReaderTests) ... ERROR
> test_embl_to_protein (skbio.io.format.tests.test_embl.ReaderTests) ... ok
> test_embl_to_rna (skbio.io.format.tests.test_embl.ReaderTests) ... ERROR
> test_embl_to_sequence (skbio.io.format.tests.test_embl.ReaderTests) ... ERROR
> test_feature_level_products (skbio.io.format.tests.test_embl.ReaderTests) ... ERROR
> Verify to have a section for each embl ID ... ok
> Testing no protein support for embl ... ok
> test_parse_assembly (skbio.io.format.tests.test_embl.ReaderTests) ... ok
> test for a wrong assembly line ... ok
> Parse ID record (first line of embl format) ... ok
> test_parse_id_invalid (skbio.io.format.tests.test_embl.ReaderTests) ... ok
> test_parse_reference (skbio.io.format.tests.test_embl.ReaderTests) ... ok
> test_roundtrip_dna (skbio.io.format.tests.test_embl.RoundtripTests) ... ERROR
> test_roundtrip_generator (skbio.io.format.tests.test_embl.RoundtripTests) ... ERROR
> test_roundtrip_rna (skbio.io.format.tests.test_embl.RoundtripTests) ... ERROR
> test_roundtrip_sequence (skbio.io.format.tests.test_embl.RoundtripTests) ... ERROR
> test_negatives (skbio.io.format.tests.test_embl.SnifferTests) ... ok
> test_positives (skbio.io.format.tests.test_embl.SnifferTests) ... ok
> test_dna_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok
> test_generator_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ERROR
> test_protein_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok
> test_rna_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ERROR
> Test writing feature level products ... ok
> test_sequence_to_embl (skbio.io.format.tests.test_embl.WriterTests) ... ok
> Serialize a complex dbsource entry ... ok
> test_serialize_id (skbio.io.format.tests.test_embl.WriterTests) ... ok
> test_empty (skbio.io.format.tests.test_emptyfile.TestEmptyFile) ... ok
> test_not_empty (skbio.io.format.tests.test_emptyfile.TestEmptyFile) ... ok
> test_fasta_to_any_sequence (skbio.io.format.tests.test_fasta.ReaderTests) ... ERROR
> test_fasta_to_generator_invalid_files (skbio.io.format.tests.test_fasta.ReaderTests) ... ERROR
> test_fasta_to_generator_valid_files (skbio.io.format.tests.test_fasta.ReaderTests) ... ERROR
> test_fasta_to_tabular_msa (skbio.io.format.tests.test_fasta.ReaderTests) ... ERROR
> test_fasta_to_tabular_msa_no_constructor (skbio.io.format.tests.test_fasta.ReaderTests) ... ERROR
> test_roundtrip_biological_sequences (skbio.io.format.tests.test_fasta.RoundtripTests) ... ok
> test_roundtrip_generators (skbio.io.format.tests.test_fasta.RoundtripTests) ... ok
> test_roundtrip_tabular_msa (skbio.io.format.tests.test_fasta.RoundtripTests) ... ok
> test_negatives (skbio.io.format.tests.test_fasta.SnifferTests) ... ok
> test_positives (skbio.io.format.tests.test_fasta.SnifferTests) ... ok
> test_any_sequence_to_fasta (skbio.io.format.tests.test_fasta.WriterTests) ... ERROR
> test_any_sequences_to_fasta (skbio.io.format.tests.test_fasta.WriterTests) ... ERROR
> test_generator_to_fasta_invalid_input (skbio.io.format.tests.test_fasta.WriterTests) ... ERROR
> test_generator_to_fasta_mixed_qual_scores (skbio.io.format.tests.test_fasta.WriterTests) ... ERROR
> test_generator_to_fasta_no_qual (skbio.io.format.tests.test_fasta.WriterTests) ... ERROR
> test_generator_to_fasta_with_qual (skbio.io.format.tests.test_fasta.WriterTests) ... ERROR
> test_conversion (skbio.io.format.tests.test_fastq.TestConversions) ... ok
> test_fastq_to_generator_invalid_files_all_variants (skbio.io.format.tests.test_fastq.TestReaders) ... ok
> test_fastq_to_generator_invalid_files_illumina (skbio.io.format.tests.test_fastq.TestReaders) ... ok
> test_fastq_to_generator_solexa (skbio.io.format.tests.test_fastq.TestReaders) ... ok
> test_fastq_to_generator_valid_files (skbio.io.format.tests.test_fastq.TestReaders) ... ERROR
> test_fastq_to_sequence (skbio.io.format.tests.test_fastq.TestReaders) ... ERROR
> test_fastq_to_tabular_msa (skbio.io.format.tests.test_fastq.TestReaders) ... ERROR
> test_fastq_to_tabular_msa_no_constructor (skbio.io.format.tests.test_fastq.TestReaders) ... ok
> test_illumina_sniffed (skbio.io.format.tests.test_fastq.TestSniffer) ... ok
> test_negatives (skbio.io.format.tests.test_fastq.TestSniffer) ... ok
> test_positives (skbio.io.format.tests.test_fastq.TestSniffer) ... ok
> test_generator_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters) ... ok
> test_generator_to_fastq_no_qual (skbio.io.format.tests.test_fastq.TestWriters) ... ok
> test_sequence_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters) ... ERROR
> test_tabular_msa_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters) ... ERROR
> test_genbank_to_dna (skbio.io.format.tests.test_genbank.ReaderTests) ... ERROR
> test_genbank_to_generator (skbio.io.format.tests.test_genbank.ReaderTests) ... ERROR
> test_genbank_to_generator_single (skbio.io.format.tests.test_genbank.ReaderTests) ... ok
> test_genbank_to_protein (skbio.io.format.tests.test_genbank.ReaderTests) ... ERROR
> test_genbank_to_rna (skbio.io.format.tests.test_genbank.ReaderTests) ... ERROR
> test_genbank_to_sequence (skbio.io.format.tests.test_genbank.ReaderTests) ... ERROR
> test_parse_locus (skbio.io.format.tests.test_genbank.ReaderTests) ... ok
> test_parse_locus_invalid (skbio.io.format.tests.test_genbank.ReaderTests) ... ok
> test_parse_reference (skbio.io.format.tests.test_genbank.ReaderTests) ... ok
> test_roundtrip_dna (skbio.io.format.tests.test_genbank.RoundtripTests) ... ERROR
> test_roundtrip_generator (skbio.io.format.tests.test_genbank.RoundtripTests) ... ERROR
> test_roundtrip_protein (skbio.io.format.tests.test_genbank.RoundtripTests) ... ERROR
> test_roundtrip_rna (skbio.io.format.tests.test_genbank.RoundtripTests) ... ERROR
> test_roundtrip_sequence (skbio.io.format.tests.test_genbank.RoundtripTests) ... ERROR
> test_negatives (skbio.io.format.tests.test_genbank.SnifferTests) ... ok
> test_positives (skbio.io.format.tests.test_genbank.SnifferTests) ... ok
> test_dna_protein_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ERROR
> test_generator_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ok
> test_rna_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ERROR
> test_sequence_to_genbank (skbio.io.format.tests.test_genbank.WriterTests) ... ERROR
> test_serialize_locus (skbio.io.format.tests.test_genbank.WriterTests) ... ok
> test_gff3_to_dna (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_gff3_to_generator (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_gff3_to_generator_empty (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_gff3_to_interval_metadata (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_gff3_to_interval_metadata_bad (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_gff3_to_interval_metadata_empty (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_gff3_to_sequence (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_parse_attr (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_parse_record_raise (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_yield_record (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_yield_record_raise (skbio.io.format.tests.test_gff3.ReaderTests) ... ok
> test_roundtrip_interval_metadata (skbio.io.format.tests.test_gff3.RoundtripTests) ... ok
> test_roundtrip_interval_metadata_generator (skbio.io.format.tests.test_gff3.RoundtripTests) ... ok
> test_negative (skbio.io.format.tests.test_gff3.SnifferTests) ... ok
> test_positive (skbio.io.format.tests.test_gff3.SnifferTests) ... ok
> test_dna_to_gff3 (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_interval_metadata_to_gff3 (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_interval_metadata_to_gff3_empty (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_interval_metadata_to_gff3_escape (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_interval_metadata_to_gff3_missing_field (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_interval_metadata_to_gff3_multiple_values (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_interval_metadata_to_gff3_sub_region (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_raise_subregion (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_sequence_to_gff3 (skbio.io.format.tests.test_gff3.WriterTests) ... ok
> test_read_invalid_files (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok
> test_read_valid_files (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok
> test_roundtrip_read_write (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok
> test_write (skbio.io.format.tests.test_lsmat.DissimilarityAndDistanceMatrixReaderWriterTests) ... ok
> test_match_csv (skbio.io.format.tests.test_lsmat.SnifferTests) ... ok
> test_match_tsv (skbio.io.format.tests.test_lsmat.SnifferTests) ... ok
> test_no_match (skbio.io.format.tests.test_lsmat.SnifferTests) ... ok
> test_newick_sniffer_invalid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_newick_sniffer_valid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_newick_to_tree_node_convert_underscores (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_newick_to_tree_node_invalid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_newick_to_tree_node_valid_files (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_roundtrip (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_tree_node_to_newick (skbio.io.format.tests.test_newick.TestNewick) ... ok
> test_read_invalid_files (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok
> test_read_valid_files (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok
> test_roundtrip_read_write (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok
> test_write (skbio.io.format.tests.test_ordination.OrdinationResultsReaderWriterTests) ... ok
> test_matches_and_nonmatches (skbio.io.format.tests.test_ordination.SnifferTests) ... ok
> test_phylip_to_tabular_msa_invalid_files (skbio.io.format.tests.test_phylip.TestReaders) ... ok
> test_phylip_to_tabular_msa_no_constructor (skbio.io.format.tests.test_phylip.TestReaders) ... ok
> test_phylip_to_tabular_msa_valid_files (skbio.io.format.tests.test_phylip.TestReaders) ... ok
> test_negatives (skbio.io.format.tests.test_phylip.TestSniffer) ... ok
> test_positives (skbio.io.format.tests.test_phylip.TestSniffer) ... ok
> test_write (skbio.io.format.tests.test_phylip.TestWriters) ... ok
> test_write_invalid_alignment (skbio.io.format.tests.test_phylip.TestWriters) ... ok
> test_qseq_sniffer_invalid_files (skbio.io.format.tests.test_qseq.TestQSeqSniffer) ... ok
> test_qseq_sniffer_valid_files (skbio.io.format.tests.test_qseq.TestQSeqSniffer) ... ok
> test_invalid_files (skbio.io.format.tests.test_qseq.TestQSeqToGenerator) ... ok
> test_valid_files (skbio.io.format.tests.test_qseq.TestQSeqToGenerator) ... ok
> test_invalid_files (skbio.io.format.tests.test_qseq.TestQSeqToSequences) ... ok
> test_valid_files (skbio.io.format.tests.test_qseq.TestQSeqToSequences) ... ok
> test_parse_loc_str (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok
> test_parse_loc_str_invalid (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok
> test_parse_section_default (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok
> test_serialize_location (skbio.io.format.tests.test_sequence_feature_vocabulary.Tests) ... ok
> test_data_type_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_differing_data_lengths_gc_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_differing_data_lengths_gr_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_differing_sequence_lengths_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_duplicate_gc_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_duplicate_gr_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_duplicate_sequence_names_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_empty_file_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_malformed_data_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_malformed_gc_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_malformed_gf_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_malformed_gr_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_malformed_gs_line_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_missing_footer_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_missing_header_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_multiple_msa_file (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_no_constructor_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_nonexistent_gr_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_nonexistent_gs_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_duplicate_tree_id_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_extensive (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_extensive_mixed (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_handles_missing_reference_items (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_maintains_order (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_metadata_only (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_minimal (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_missing_reference_number_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_mixed_runon_references (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_multi_line_tree_no_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_multi_line_tree_with_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_multiple_multi_line_trees (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_multiple_references (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_multiple_trees (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_no_data (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_rna (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_runon_gf (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_runon_gs (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_runon_references (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_single_tree_with_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_single_tree_without_id (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_to_msa_different_padding (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_with_blank_lines (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockholm_with_whitespace_only_lines (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_stockhom_single_reference (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_unsupported_constructor_error (skbio.io.format.tests.test_stockholm.TestStockholmReader) ... ok
> test_negatives (skbio.io.format.tests.test_stockholm.TestStockholmSniffer) ... ok
> test_positives (skbio.io.format.tests.test_stockholm.TestStockholmSniffer) ... ok
> test_gc_wrong_dataframe_item_length_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_gr_wrong_dataframe_item_length_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_invalid_reference_tag_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_data_only (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_empty (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_extensive (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_minimal (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_multiple_references (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_multiple_trees (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_nonstring_values (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_single_reference (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_single_tree (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_msa_to_stockholm_single_tree_as_dict (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_rn_data_not_in_dict_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_rn_not_list_of_refs_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_data_only (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_empty (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_extensive (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_minimal (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_missing_references (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_multiple_references (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_multiple_trees (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_nonstring_index_values (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_single_reference (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_round_trip_single_tree (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_unoriginal_gc_feature_names_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_unoriginal_gr_feature_names_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_unoriginal_index_error (skbio.io.format.tests.test_stockholm.TestStockholmWriter) ... ok
> test_attributes (skbio.io.tests.test_iosources.TestCompressor) ... ok
> test_can_read (skbio.io.tests.test_iosources.TestCompressor) ... ok
> test_can_write (skbio.io.tests.test_iosources.TestCompressor) ... ok
> test_get_reader (skbio.io.tests.test_iosources.TestCompressor) ... ok
> test_get_writer (skbio.io.tests.test_iosources.TestCompressor) ... ok
> test_attributes (skbio.io.tests.test_iosources.TestIOSource) ... ok
> test_can_read (skbio.io.tests.test_iosources.TestIOSource) ... ok
> test_can_write (skbio.io.tests.test_iosources.TestIOSource) ... ok
> test_get_reader (skbio.io.tests.test_iosources.TestIOSource) ... ok
> test_get_writer (skbio.io.tests.test_iosources.TestIOSource) ... ok
> test_add_duplicate_format (skbio.io.tests.test_registry.TestFormatAndIORegistry) ... ok
> test_many_read_formats (skbio.io.tests.test_registry.TestListReadFormats) ... ok
> test_no_read_formats (skbio.io.tests.test_registry.TestListReadFormats) ... ok
> test_one_read_format (skbio.io.tests.test_registry.TestListReadFormats) ... ok
> test_many_write_formats (skbio.io.tests.test_registry.TestListWriteFormats) ... ok
> test_no_write_formats (skbio.io.tests.test_registry.TestListWriteFormats) ... ok
> test_one_write_format (skbio.io.tests.test_registry.TestListWriteFormats) ... ok
> test_create_format_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok
> test_read_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok
> test_sniff_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok
> test_write_matches (skbio.io.tests.test_registry.TestModuleFunctions) ... ok
> test_no_readers_writers (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_read_kwargs_passed (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_readers_only (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_readers_writers (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_write_kwargs_passed (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_writers_no_default_format (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_writers_only (skbio.io.tests.test_registry.TestMonkeyPatch) ... ok
> test_file_sentinel_converted_to_none (skbio.io.tests.test_registry.TestRead) ... ok
> test_file_sentinel_converted_to_none_generator (skbio.io.tests.test_registry.TestRead) ... ok
> test_file_sentinel_generator_many (skbio.io.tests.test_registry.TestRead) ... ok
> test_file_sentinel_many (skbio.io.tests.test_registry.TestRead) ... ok
> test_file_sentinel_pass_none (skbio.io.tests.test_registry.TestRead) ... ok
> test_file_sentinel_pass_none_generator (skbio.io.tests.test_registry.TestRead) ... ok
> test_format_and_into_are_none (skbio.io.tests.test_registry.TestRead) ... ok
> test_format_is_none (skbio.io.tests.test_registry.TestRead) ... ok
> test_into_is_none (skbio.io.tests.test_registry.TestRead) ... ok
> test_into_is_none_and_no_generator_reader (skbio.io.tests.test_registry.TestRead) ... ok
> test_into_is_none_real_file (skbio.io.tests.test_registry.TestRead) ... ok
> test_io_kwargs_passed (skbio.io.tests.test_registry.TestRead) ... ok
> test_non_default_encoding (skbio.io.tests.test_registry.TestRead) ... ok
> test_non_default_newline (skbio.io.tests.test_registry.TestRead) ... ok
> test_passing_newline_raises_error (skbio.io.tests.test_registry.TestRead) ... ok
> test_read_empty_file_gen_with_format (skbio.io.tests.test_registry.TestRead) ... ok
> test_read_kwargs_passed_and_override (skbio.io.tests.test_registry.TestRead) ... ok
> test_read_kwargs_passed_generator (skbio.io.tests.test_registry.TestRead) ... ok
> test_read_with_binary_encoding (skbio.io.tests.test_registry.TestRead) ... ok
> test_read_with_illegal_encoding (skbio.io.tests.test_registry.TestRead) ... ok
> test_reader_does_not_exist (skbio.io.tests.test_registry.TestRead) ... ok
> test_reader_exists_real_file (skbio.io.tests.test_registry.TestRead) ... ok
> test_reader_exists_with_verify_false (skbio.io.tests.test_registry.TestRead) ... ok
> test_reader_exists_with_verify_true (skbio.io.tests.test_registry.TestRead) ... ok
> test_that_encoding_is_used (skbio.io.tests.test_registry.TestRead) ... ok
> test_warning_raised (skbio.io.tests.test_registry.TestRead) ... ok
> test_get_reader_no_match (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok
> test_get_reader_when_only_writer_exists (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok
> test_mistype_reader_registration (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok
> test_register_reader_on_many (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok
> test_register_reader_over_existing (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok
> test_register_reader_over_existing_override (skbio.io.tests.test_registry.TestRegisterAndGetReader) ... ok
> test_get_sniffer_no_match (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok
> test_mistype_sniffer_registration (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok
> test_register_sniffer_on_many (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok
> test_register_sniffer_over_existing (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok
> test_register_sniffer_over_existing_override (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok
> test_sniffer_warns_on_exception (skbio.io.tests.test_registry.TestRegisterAndGetSniffer) ... ok
> test_get_writer_no_match (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok
> test_get_writer_when_only_reader_exists (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok
> test_mistype_writer_registration (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok
> test_register_writer_on_many (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok
> test_register_writer_over_existing (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok
> test_register_writer_over_existing_override (skbio.io.tests.test_registry.TestRegisterAndGetWriter) ... ok
> test_binary_fall_through (skbio.io.tests.test_registry.TestSniff) ... ok
> test_binary_sniffer (skbio.io.tests.test_registry.TestSniff) ... ok
> test_many_matches (skbio.io.tests.test_registry.TestSniff) ... ok
> test_no_matches (skbio.io.tests.test_registry.TestSniff) ... ok
> test_non_default_encoding (skbio.io.tests.test_registry.TestSniff) ... ok
> test_non_default_newline (skbio.io.tests.test_registry.TestSniff) ... ok
> test_one_match (skbio.io.tests.test_registry.TestSniff) ... ok
> test_passing_newline_raises_error (skbio.io.tests.test_registry.TestSniff) ... ok
> test_position_not_mutated_fileish (skbio.io.tests.test_registry.TestSniff) ... ok
> test_position_not_mutated_real_file (skbio.io.tests.test_registry.TestSniff) ... ok
> test_sniff_gzip (skbio.io.tests.test_registry.TestSniff) ... ok
> test_sniff_with_encoding_errors (skbio.io.tests.test_registry.TestSniff) ... ok
> test_sniff_with_errors_in_sniffer (skbio.io.tests.test_registry.TestSniff) ... ok
> test_sniff_with_illegal_encoding (skbio.io.tests.test_registry.TestSniff) ... ok
> test_text_skip_binary (skbio.io.tests.test_registry.TestSniff) ... ok
> test_text_skip_text (skbio.io.tests.test_registry.TestSniff) ... ok
> test_text_sniffer (skbio.io.tests.test_registry.TestSniff) ... ok
> test_that_encoding_is_used (skbio.io.tests.test_registry.TestSniff) ... ok
> test_file_sentinel_converted_to_none (skbio.io.tests.test_registry.TestWrite) ... ok
> test_file_sentinel_many (skbio.io.tests.test_registry.TestWrite) ... ok
> test_file_sentinel_pass_none (skbio.io.tests.test_registry.TestWrite) ... ok
> test_io_kwargs_passed (skbio.io.tests.test_registry.TestWrite) ... ok
> test_non_default_encoding (skbio.io.tests.test_registry.TestWrite) ... ok
> test_non_default_newline (skbio.io.tests.test_registry.TestWrite) ... ok
> test_that_encoding_is_used (skbio.io.tests.test_registry.TestWrite) ... ok
> test_that_newline_is_used (skbio.io.tests.test_registry.TestWrite) ... ok
> test_write_binary_format (skbio.io.tests.test_registry.TestWrite) ... ok
> test_write_with_illegal_encoding (skbio.io.tests.test_registry.TestWrite) ... ok
> test_writer_does_not_exist (skbio.io.tests.test_registry.TestWrite) ... ok
> test_writer_exists (skbio.io.tests.test_registry.TestWrite) ... ok
> test_writer_exists_real_file (skbio.io.tests.test_registry.TestWrite) ... ok
> test_writer_passed_kwargs (skbio.io.tests.test_registry.TestWrite) ... ok
> test_open (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok
> test_open_empty_iterable (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok
> test_open_invalid_iterable (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok
> test_open_with_newline (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok
> test_open_write_mode (skbio.io.tests.test_util.TestIterableReaderWriter) ... ok
> test_open_invalid_compression (skbio.io.tests.test_util.TestOpen) ... ok
> test_open_invalid_mode (skbio.io.tests.test_util.TestOpen) ... ok
> test_open_invalid_source (skbio.io.tests.test_util.TestOpen) ... ok
> test_open_invalid_source_compression (skbio.io.tests.test_util.TestOpen) ... ok
> test_open_invalid_source_encoding (skbio.io.tests.test_util.TestOpen) ... ok
> test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_binary_compression_none (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_gc_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_gc_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_gc_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_gc_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_gc_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_underclose_binary (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_underclose_compression (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_underclose_encoding (skbio.io.tests.test_util.TestReadBufferedReader) ... ok
> test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_binary_compression_none (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_gc_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_gc_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_gc_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_gc_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_gc_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_underclose_binary (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_underclose_compression (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_underclose_encoding (skbio.io.tests.test_util.TestReadBytesIO) ... ok
> test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_binary_compression_none (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_gc_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_gc_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_gc_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_gc_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_gc_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_underclose_binary (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_underclose_compression (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_underclose_encoding (skbio.io.tests.test_util.TestReadFilepath) ... ok
> test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_binary_compression_none (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_gc_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_gc_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_gc_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_gc_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_gc_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_underclose_binary (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_underclose_compression (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_underclose_encoding (skbio.io.tests.test_util.TestReadNamedTemporaryFile) ... ok
> test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_binary_compression_none (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_gc_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_gc_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_gc_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_gc_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_gc_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_underclose_binary (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_underclose_compression (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_underclose_encoding (skbio.io.tests.test_util.TestReadTemporaryFile) ... ok
> test_open_auto_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_binary_compression_none (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_bz2_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_default_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_auto_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_binary_compression_none (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_bz2_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_default_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_gc_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_gc_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_gc_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_gc_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_gzip_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_underclose_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_underclose_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_underclose_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_file_underclose_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_gc_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_gc_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_gc_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_gc_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_gzip_compression_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_underclose_binary (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_underclose_compression (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_underclose_compression_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_underclose_encoding (skbio.io.tests.test_util.TestReadURL) ... SKIP: HTTPretty not available to mock tests.
> test_open_binary (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok
> test_open_bz2 (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok
> test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok
> test_open_gzip (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok
> test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteBufferedReader) ... ok
> test_open_binary (skbio.io.tests.test_util.TestWriteBytesIO) ... ok
> test_open_bz2 (skbio.io.tests.test_util.TestWriteBytesIO) ... ok
> test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteBytesIO) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestWriteBytesIO) ... ok
> test_open_gzip (skbio.io.tests.test_util.TestWriteBytesIO) ... ok
> test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteBytesIO) ... ok
> test_open_binary (skbio.io.tests.test_util.TestWriteFilepath) ... ok
> test_open_bz2 (skbio.io.tests.test_util.TestWriteFilepath) ... ok
> test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteFilepath) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestWriteFilepath) ... ok
> test_open_gzip (skbio.io.tests.test_util.TestWriteFilepath) ... ok
> test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteFilepath) ... ok
> test_open_binary (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok
> test_open_bz2 (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok
> test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok
> test_open_gzip (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok
> test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteNamedTemporaryFile) ... ok
> test_open_binary (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok
> test_open_bz2 (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok
> test_open_bz2_encoding (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok
> test_open_encoding (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok
> test_open_gzip (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok
> test_open_gzip_encoding (skbio.io.tests.test_util.TestWriteTemporaryFile) ... ok
> test_edge_cases (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok
> test_empty (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok
> test_find (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok
> test_public_interval (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok
> test_traverse (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok
> test_update (skbio.metadata.tests.test_intersection.IntervalTreeTest) ... ok
> test_count (skbio.metadata.tests.test_intersection.LotsaTestCase) ... ok
> test_find (skbio.metadata.tests.test_intersection.LotsaTestCase) ... ok
> test_max_dist (skbio.metadata.tests.test_intersection.LotsaTestCase) ... ok
> test_left (skbio.metadata.tests.test_intersection.NeighborTestCase) ... ok
> test_right (skbio.metadata.tests.test_intersection.NeighborTestCase) ... ok
> test_toomany (skbio.metadata.tests.test_intersection.NeighborTestCase) ... ok
> test_downstream (skbio.metadata.tests.test_intersection.UpDownStreamTestCase) ... ok
> test_n (skbio.metadata.tests.test_intersection.UpDownStreamTestCase) ... ok
> test_upstream (skbio.metadata.tests.test_intersection.UpDownStreamTestCase) ... ok
> test_delete_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_delete_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_drop (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_eq (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_get_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_get_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_get_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_get_on_dropped (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_bad_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_bad_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_bounds_scrambled (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_default (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_empty_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_generator (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_iterables (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_no_interval_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_init_out_of_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_repr (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_bounds (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_bounds_bad (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_delete_on_dropped (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_fuzzy (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_fuzzy_bad (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_metadata (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_set_metadata_bad (skbio.metadata.tests.test_interval.TestInterval) ... ok
> test_add_eq_start_end_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_add_eq_upper_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_add_gt_upper_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_concat (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_concat_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_copy (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_copy_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_deepcopy (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_deepcopy_memo_is_respected (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_drop (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_drop_all (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_drop_negate (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> Test query and drop methods on duplicate Intervals. ... ok
> test_duplicate_bounds (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_eq_ne (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_init (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_init_copy_from (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_init_copy_from_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_init_copy_from_error (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_init_copy_from_shallow_copy (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_init_upper_bound_lt_lower_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_merge (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_merge_to_unbounded (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_merge_unbounded_to_bounded (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_merge_unequal_upper_bounds (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_ne_diff_bounds (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_num_interval_features (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_attribute (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_empty (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_interval (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_interval_only (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_interval_upper_bound (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_metadata_only (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_query_no_hits (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_repr (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_reverse (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_sort (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_upper_bound_is_none (skbio.metadata.tests.test_interval.TestIntervalMetadata) ... ok
> test_assert_valid_bound (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok
> test_assert_valid_bound_wrong_type (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok
> test_assert_valid_bound_wrong_value (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok
> test_assert_valid_fuzzy (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok
> test_assert_valid_fuzzy_wrong_type (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok
> test_assert_valid_fuzzy_wrong_value (skbio.metadata.tests.test_interval.TestIntervalUtil) ... ok
> test_constructor_empty_interval_metadata_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_handles_missing_interval_metadata_efficiently (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_interval_bounds_larger_than_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_interval_metadata_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_interval_metadata_len_0 (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_interval_metadata_len_mismatch (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_interval_metadata_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_invalid (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_makes_shallow_copy_of_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_no_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_copy_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_copy_interval_metadata_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_copy_interval_metadata_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_deepcopy_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_deepcopy_interval_metadata_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_deepcopy_interval_metadata_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_deepcopy_memo_is_respected (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_eq_basic (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_eq_handles_missing_positional_metadata_efficiently (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_eq_populated_differently (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_has_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_deleter (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_deleter_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_getter (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_getter_no_interval_metadata (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter_empty_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter_interval_bounds_larger_than_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter_invalid_type (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter_len_mismatch (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter_makes_copy (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_interval_metadata_setter_upper_bound_is_none (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_ne (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_ne_diff_len (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_ne_only_one_is_empty (skbio.metadata.tests.test_mixin.TestIntervalMetadataMixin) ... ok
> test_constructor_handles_missing_metadata_efficiently (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_constructor_invalid_type (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_constructor_makes_shallow_copy_of_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_constructor_no_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_constructor_with_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_copy_metadata_empty (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_copy_metadata_none (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_copy_with_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_deepcopy_memo_is_respected (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_deepcopy_metadata_empty (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_deepcopy_metadata_none (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_deepcopy_with_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_eq (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_eq_handles_missing_metadata_efficiently (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_eq_missing_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_has_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_metadata_deleter (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_metadata_getter (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_metadata_getter_no_metadata (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_metadata_setter (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_metadata_setter_invalid_type (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_metadata_setter_makes_shallow_copy (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_ne (skbio.metadata.tests.test_mixin.TestMetadataMixin) ... ok
> test_constructor_handles_missing_positional_metadata_efficiently (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_invalid_positional_metadata_type (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_makes_shallow_copy_of_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_no_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_positional_metadata_len_mismatch (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_with_positional_metadata_custom_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_with_positional_metadata_int64_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_with_positional_metadata_len_greater_than_one (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_with_positional_metadata_len_one (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_with_positional_metadata_len_zero (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_constructor_with_positional_metadata_multiple_columns (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_copy_positional_metadata_empty (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_copy_positional_metadata_none (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_copy_preserves_range_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_copy_with_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_deepcopy_memo_is_respected (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_deepcopy_positional_metadata_empty (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_deepcopy_positional_metadata_none (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_deepcopy_preserves_range_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_deepcopy_with_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_eq_basic (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_eq_from_different_source (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_eq_handles_missing_positional_metadata_efficiently (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_eq_missing_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_has_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_ne_len_greater_than_zero (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_ne_len_mismatch (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_ne_len_zero (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_deleter (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_getter (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_getter_no_positional_metadata (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_getter_set_column_array (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_getter_set_column_series (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_data_frame (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_int64_index (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_invalid_type (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_len_mismatch (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_makes_shallow_copy (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_none (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_positional_metadata_setter_pandas_consumable (skbio.metadata.tests.test_mixin.TestPositionalMetadataMixin) ... ok
> test_empty_sequences (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_length_mismatch (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_maximum_distance (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_mid_range_distance (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_minimum_distance (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_non_sequence (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_return_type (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_sequence_subclass (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_sequences_with_metadata (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_single_character_sequences (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_type_mismatch (skbio.sequence.tests.test_distance.TestHamming) ... ok
> test_default_kwargs (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_differing_length_seqs (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_empty_sequences (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_entirely_different_sequences (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_k_less_than_one_error (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_no_kmers_found (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_non_sequence_error (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_nondefault_k (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_one_empty_sequence (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_overlap_false (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_return_type (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_same_sequence (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_type_mismatch_error (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_with_metadata_sanity (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_with_sequence_subclass (skbio.sequence.tests.test_distance.TestKmerDistance) ... ok
> test_cannot_subclass (skbio.sequence.tests.test_dna.TestDNA) ... ok
> test_transcribe (skbio.sequence.tests.test_dna.TestDNA) ... ok
> test_transcribe_does_not_modify_input (skbio.sequence.tests.test_dna.TestDNA) ... ok
> test_transcribe_preserves_all_metadata (skbio.sequence.tests.test_dna.TestDNA) ... ok
> test_eq (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_from_ncbi_invalid_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_from_ncbi_valid_table_ids (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_init_invalid_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_init_varied_equivalent_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_name (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_ne (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_reading_frames (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_repr (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_str (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_default_behavior (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_invalid_input (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_preserves_metadata (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_reading_frame_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_reading_frame_non_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_six_frames (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_six_frames_preserves_metadata (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_start_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_start_no_accidental_mutation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_start_no_start_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_start_with_start_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_stop_empty_translation (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_stop_no_stop_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_stop_with_stop_codon (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_trim_to_cds (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_translate_varied_genetic_codes (skbio.sequence.tests.test_genetic_code.TestGeneticCode) ... ok
> test_alphabet (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_default_gap_char (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_default_gap_must_be_in_gap_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_definite_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_definites (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_degap (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_degenerate_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_degenerate_map (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_degenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_degenerates_and_definites_share (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_degenerates_must_expand_to_valid_definites (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_expand_degenerates_all_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_expand_degenerates_no_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_expand_degenerates_with_metadata (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_find_motifs (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_find_motifs_no_motif (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_gap_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_gap_chars_and_definites_share (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_gap_chars_and_degenerates_share (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_gaps (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_has_definites (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_has_degenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_has_gaps (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_has_nondegenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/_decorator.py:257: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites
>   SkbioDeprecationWarning)
> ok
> test_init_default_parameters (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_lowercase_all_lowercase (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ERROR
> test_init_lowercase_byte_ownership (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_lowercase_invalid_keys (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_lowercase_mixed_case (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ERROR
> test_init_lowercase_no_validation (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... FAIL
> test_init_nondefault_parameters (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_valid_empty_sequence (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_valid_multiple_character_sequence (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_valid_single_character_sequence (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_validate_parameter_multiple_characters (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_init_validate_parameter_single_character (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_instantiation_with_no_implementation (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_nondegenerate_chars (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/_decorator.py:257: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars
>   SkbioDeprecationWarning)
> ok
> test_nondegenerates (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/_decorator.py:257: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites
>   SkbioDeprecationWarning)
> ok
> test_repr (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_to_regex_no_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_to_regex_with_degens (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence) ... ok
> test_complement_map (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_complement_with_reverse_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_complement_with_reverse_non_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_complement_without_reverse_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_complement_without_reverse_non_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_definite_chars (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_degenerate_map (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_gc_frequency_and_gc_content (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_instantiation_with_no_implementation (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_is_reverse_complement_empty (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_is_reverse_complement_metadata_ignored (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_is_reverse_complement_non_reverse_complements (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_is_reverse_complement_type_mismatch (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_is_reverse_complement_varied_types (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_motif_purine_run (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_motif_pyrimidine_run (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_nondegenerate_chars (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_repr (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_reverse_complement (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_genetic_code_object (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_invalid_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_ncbi_table_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_passes_parameters_through (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_preserves_metadata (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_six_frames_genetic_code_object (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_six_frames_invalid_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_six_frames_ncbi_table_id (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_six_frames_passes_parameters_through (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_translate_six_frames_preserves_metadata (skbio.sequence.tests.test_nucleotide_sequences.TestNucleotideSequence) ... ok
> test_alphabet (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_cannot_subclass (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_definite_chars (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_degenerate_map (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_has_stops (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_motif_n_glycosylation (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_nondegenerate_chars (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_repr (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_stop_chars (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_stops (skbio.sequence.tests.test_protein.TestProtein) ... ok
> test_cannot_subclass (skbio.sequence.tests.test_rna.TestRNA) ... ok
> test_reverse_transcribe (skbio.sequence.tests.test_rna.TestRNA) ... ok
> test_reverse_transcribe_does_not_modify_input (skbio.sequence.tests.test_rna.TestRNA) ... ok
> test_reverse_transcribe_preserves_all_metadata (skbio.sequence.tests.test_rna.TestRNA) ... ok
> test_arbitrary_metric (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_default_metric_matches_hamming (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_default_metric_with_metadata (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_invalid_return_type (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_mungeable_inputs_to_sequence (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_mungeable_inputs_to_sequence_subclass (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_munging_invalid_characters_to_self_type (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_munging_invalid_type_to_self_type (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_return_type_coercion (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_scipy_hamming_metric_with_metadata (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_sequence_type_mismatch (skbio.sequence.tests.test_sequence.TestDistance) ... ok
> test_as_slice_if_single_index (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_bad_how (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_default_how (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_inner_missing (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_inner_simple (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_on_bad_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_on_empty_iterator (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_one_seq_has_none_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_outer_missing (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_outer_simple (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_strict_fail (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_strict_many (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_concat_strict_simple (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_contains (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_contains_sequence_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_copy_preserves_read_only_flag_on_bytes (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_copy_with_metadata_deep (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_copy_with_metadata_shallow (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_copy_without_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_count (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_count_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_and_ne (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_interval_metadata_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_positional_metadata_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_sequence_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_sequences_from_different_sources_compare_equal (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_sequences_with_metadata_compare_equal (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_sequences_without_metadata_compare_equal (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_eq_type_mismatch (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_find_with_regex (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_find_with_regex_ignore (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_find_with_regex_ignore_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_find_with_regex_ignore_no_difference (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_find_with_regex_no_groups (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_find_with_regex_string_as_input (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_chars_varied_type (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_equivalent_to_kmer_frequencies_k_of_1 (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_invalid_chars (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_observed_chars (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_passing_observed_chars_equivalent_to_default (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_frequencies_specified_chars (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_drops_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_empty_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_gives_new_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_boolean_vector_has_qual (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_boolean_vector_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_empty_indices_empty_seq_no_pos_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_empty_indices_non_empty_seq_no_pos_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_int_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_int_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_invalid (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_iterable_of_mixed_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_iterable_of_mixed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_numpy_index_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_numpy_index_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_slice_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_slice_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_tuple_of_mixed_no_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_tuple_of_mixed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_getitem_with_tuple_of_mixed_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_hash (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_index (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_index_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_default_parameters (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_from_contiguous_sequence_bytes_view (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_from_non_descendant_sequence_object (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_from_noncontiguous_sequence_bytes_view (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_from_sequence_object (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_invalid_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_multiple_character_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_no_copy_of_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_nondefault_parameters (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_init_single_character_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_is_single_index (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_contiguous_boolean_vector (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_contiguous_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_contiguous_iterable_slices (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_contiguous_with_invert (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_contiguous_with_max_length (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_different_sequences (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_different_sequences_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_empty_sequence_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_invalid_k (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_invalid_k_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_with_overlap (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_kmers_with_overlap_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_iter_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_kmer_frequencies (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_kmer_frequencies_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_kmer_frequencies_floating_point_precision (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_kmer_frequencies_relative (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_len (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_lowercase_array_key (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_lowercase_mungeable_key (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_match_frequency (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_match_frequency_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_match_frequency_relative (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_match_frequency_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_matches (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_matches_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_matches_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatch_frequence_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatch_frequency (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatch_frequency_relative (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatch_frequency_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatches (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatches_on_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_mismatches_unequal_length (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_bytestring_return_bytes (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_bytestring_unicode_out_of_ascii_range (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_invalid_bool_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_invalid_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_invalid_iterable (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_invalid_string (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_valid_bool_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_valid_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_valid_iterable (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_munge_to_index_array_valid_string (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_nonzero (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_observed_chars_property (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_does_not_mutate_original (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_index_array (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_index_in_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_invalid_char_error (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_invalid_char_for_type_error (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_iterable_slices (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_non_single_character_error (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_sanity (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_with_bytes (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_with_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_replace_with_subclass (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_repr (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_reversed_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_reversed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_sequence_numpy_compatibility (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_single_index_to_slice (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_slice_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_str (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_values_property (skbio.sequence.tests.test_sequence.TestSequence) ... ERROR
> test_constructor_empty_interval_metadata_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_handles_missing_interval_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_interval_bounds_larger_than_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_interval_metadata_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_interval_metadata_len_0 (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_interval_metadata_len_mismatch (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_interval_metadata_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_invalid (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_makes_shallow_copy_of_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_no_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_copy_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_copy_interval_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_copy_interval_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_deepcopy_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_deepcopy_interval_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_deepcopy_interval_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_eq_basic (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_eq_handles_missing_positional_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_eq_populated_differently (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_has_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_deleter (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_deleter_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_getter (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_getter_no_interval_metadata (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter_empty_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter_interval_bounds_larger_than_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter_invalid_type (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter_len_mismatch (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter_makes_copy (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_interval_metadata_setter_upper_bound_is_none (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_ne (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_ne_diff_len (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_ne_only_one_is_empty (skbio.sequence.tests.test_sequence.TestSequenceIntervalMetadata) ... ok
> test_constructor_handles_missing_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_constructor_invalid_type (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_constructor_makes_shallow_copy_of_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_constructor_no_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_constructor_with_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_copy_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_copy_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_copy_with_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_deepcopy_metadata_empty (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_deepcopy_metadata_none (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_deepcopy_with_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_eq (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_eq_handles_missing_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_eq_missing_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_has_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_metadata_deleter (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_metadata_getter (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_metadata_getter_no_metadata (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_metadata_setter (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_metadata_setter_invalid_type (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_metadata_setter_makes_shallow_copy (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_ne (skbio.sequence.tests.test_sequence.TestSequenceMetadata) ... ok
> test_constructor_handles_missing_positional_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_invalid_positional_metadata_type (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_makes_shallow_copy_of_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_positional_metadata_len_mismatch (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_with_positional_metadata_custom_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_with_positional_metadata_int64_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_with_positional_metadata_len_greater_than_one (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_with_positional_metadata_len_one (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_with_positional_metadata_len_zero (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_constructor_with_positional_metadata_multiple_columns (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_copy_positional_metadata_empty (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_copy_positional_metadata_none (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_copy_preserves_range_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_copy_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_deepcopy_positional_metadata_empty (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_deepcopy_positional_metadata_none (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_deepcopy_preserves_range_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_deepcopy_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_eq_basic (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_eq_from_different_source (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_eq_handles_missing_positional_metadata_efficiently (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_eq_missing_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_ne_len_greater_than_zero (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_ne_len_mismatch (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_ne_len_zero (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_deleter (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_getter (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_getter_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_getter_set_column_array (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_getter_set_column_series (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_data_frame (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_int64_index (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_invalid_type (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_len_mismatch (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_makes_shallow_copy (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_none (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_positional_metadata_setter_pandas_consumable (skbio.sequence.tests.test_sequence.TestSequencePositionalMetadata) ... ok
> test_no_permutations (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok
> test_no_ties (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok
> test_ties (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok
> test_unequal_group_sizes (skbio.stats.distance.tests.test_anosim.TestANOSIM) ... ok
> test_preprocess_input_raises_error (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... /usr/lib/python3/dist-packages/pandas/core/indexing.py:870: FutureWarning: 
> Passing list-likes to .loc or [] with any missing label will raise
> KeyError in the future, you can use .reindex() as an alternative.
> 
> See the documentation here:
> https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike
>   return self._getitem_lowerdim(tup)
> ok
> test_preprocess_input_with_valid_input (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok
> test_run_monte_carlo_stats_invalid_permutations (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok
> test_run_monte_carlo_stats_no_permutations (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok
> test_run_monte_carlo_stats_with_permutations (skbio.stats.distance.tests.test_base.CategoricalStatsHelperFunctionTests) ... ok
> test_contains (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_copy (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_data (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_dtype (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_eq (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_asymmetric (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_duplicate_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_empty_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_missing_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_missing_ids_strict_false (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_no_filtering (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_reorder (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_single_id (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_filter_subset (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_asymmetric_data (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_empty (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_no_key (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_non_hollow_data (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_scipy_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_single (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_skbio_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_with_key (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_with_key_and_keys (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_from_iterable_with_keys (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_getitem_by_id (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_getitem_by_id_pair (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_getitem_ndarray_indexing (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_getslice (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_ids_invalid_input (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_index (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_init_from_dm (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_init_invalid_input (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_init_no_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_init_non_hollow_dm (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_ne (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_plot_default (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_plot_no_default (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_png (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_redundant_form (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_repr_png (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_repr_svg (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_shape (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_size (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_str (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_svg (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_to_data_frame_1x1 (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_to_data_frame_3x3 (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_to_data_frame_default_ids (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_transpose (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_validate_invalid_dtype (skbio.stats.distance.tests.test_base.DissimilarityMatrixTests) ... ok
> test_condensed_form (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_eq (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_empty (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_no_key (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_scipy_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_single (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_skbio_hamming_metric_with_metadata (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_validate_asym (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_validate_equal_valid_data (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_validate_false (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_validate_false_non_symmetric (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_validate_non_hollow (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_with_key (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_with_key_and_keys (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_from_iterable_with_keys (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_init_from_condensed_form (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_init_invalid_input (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_init_nans (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_permute_condensed (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_permute_not_condensed (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_to_series_1x1 (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_to_series_2x2 (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_to_series_4x4 (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_to_series_default_ids (skbio.stats.distance.tests.test_base.DistanceMatrixTests) ... ok
> test_constructor (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok
> test_default_usage (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok
> test_ids (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok
> test_invalid_input (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok
> test_large_matrix_for_symmetry (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok
> test_random_fn (skbio.stats.distance.tests.test_base.RandomDistanceMatrixTests) ... ok
> test_bioenv_all_columns_explicit (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_all_columns_implicit (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_different_column_order (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_duplicate_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_missing_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_missing_distance_matrix_ids (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_nans (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_no_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_no_data_frame (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_no_distance_matrix (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_no_side_effects (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_nonnumeric_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_single_column (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_bioenv_vegan_example (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_scale_multiple_columns (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_scale_no_variance (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_scale_single_column (skbio.stats.distance.tests.test_bioenv.BIOENVTests) ... ok
> test_comparing_same_matrices (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_distance_matrix_instances_as_input (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_distance_matrix_instances_with_lookup (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_distance_matrix_instances_with_reordering_and_nonmatching (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_invalid_distance_matrix (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_invalid_input (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_negative_correlation (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_no_side_effects (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_no_variation_pearson (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_no_variation_spearman (skbio.stats.distance.tests.test_mantel.MantelTests) ... /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2530: RuntimeWarning: invalid value encountered in true_divide
>   c /= stddev[:, None]
> /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2531: RuntimeWarning: invalid value encountered in true_divide
>   c /= stddev[None, :]
> /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in greater
>   return (self.a < x) & (x < self.b)
> /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:879: RuntimeWarning: invalid value encountered in less
>   return (self.a < x) & (x < self.b)
> /usr/lib/python3/dist-packages/scipy/stats/_distn_infrastructure.py:1821: RuntimeWarning: invalid value encountered in less_equal
>   cond2 = cond0 & (x <= self.a)
> ok
> test_one_sided_greater (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_one_sided_less (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_statistic_same_across_alternatives_and_permutations (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_two_sided (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_vegan_example (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_zero_permutations (skbio.stats.distance.tests.test_mantel.MantelTests) ... ok
> test_array_like_input (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_id_lookup (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_lookup_with_array_like (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_missing_ids_in_lookup (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_mixed_input_types (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_no_matching_ids (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_nonmatching_ids_strict_true (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_reordered_and_nonmatching_distance_matrices (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_reordered_distance_matrices (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_shape_mismatch (skbio.stats.distance.tests.test_mantel.OrderDistanceMatricesTests) ... ok
> test_duplicate_dms (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_duplicate_labels (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_filepaths_as_input (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_id_lookup (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_many_filepaths_as_input (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_minimal_compatible_input (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_minimal_compatible_input_with_labels (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_mixed_input_types (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_na_p_value (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_reordered_distance_matrices (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_strict (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_too_few_dms (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_wrong_number_of_labels (skbio.stats.distance.tests.test_mantel.PairwiseMantelTests) ... ok
> test_call_no_permutations (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok
> test_call_no_ties (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok
> test_call_ties (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok
> test_call_unequal_group_sizes (skbio.stats.distance.tests.test_permanova.TestPERMANOVA) ... ok
> test_centroid_normal (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_centroids_eq_groups (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269621 and the largest is 16.5872013747859.
>   RuntimeWarning
> ok
> test_centroids_mixedgroups (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395208 and the largest is 20.90315427793891.
>   RuntimeWarning
> ok
> test_centroids_null (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in true_divide
>   proportion_explained = eigvals / sum_eigenvalues
> /usr/lib/python3/dist-packages/scipy/stats/stats.py:2933: RuntimeWarning: invalid value encountered in true_divide
>   f = msb / msw
> ok
> the expected result here was calculated by hand ... ok
> test_confirm_betadispr_results (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/ordination/_principal_coordinate_analysis.py:152: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.007758325147780628 and the largest is 2.7077929489469255.
>   RuntimeWarning
> ok
> test_hdmedians (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_median_normal (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_mismatched_group (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_no_permuations (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_not_distance_matrix (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_single_group (skbio.stats.distance.tests.test_permdisp.testPERMDISP) ... ok
> test_dm_too_small (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_gen_lists (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_get_dist (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_hommola_cospeciation_asymmetric (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_hommola_cospeciation_no_sig (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_hommola_cospeciation_sig (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_hommola_vs_mantel (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_host_interaction_not_equal (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_interaction_too_few (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_par_interaction_not_equal (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_permutations_too_few (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_zero_permutations (skbio.stats.evolve.tests.test_hommola.HommolaCospeciationTests) ... ok
> test_Y_values (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok
> test_all_zero_row (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok
> test_scaling (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok
> test_shape (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAErrors) ... ok
> test_scaling1 (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAResults1) ... ok
> test_scaling2 (skbio.stats.ordination.tests.test_canonical_correspondence_analysis.TestCCAResults1) ... ok
> test_negative (skbio.stats.ordination.tests.test_correspondence_analysis.TestCAErrors) ... ok
> In scaling 1, chi^2 distance among rows (samples) is equal to ... ok
> In scaling 2, chi^2 distance among columns (features) is ... ok
> test_scaling1 (skbio.stats.ordination.tests.test_correspondence_analysis.TestCAResults) ... ok
> test_scaling2 (skbio.stats.ordination.tests.test_correspondence_analysis.TestCAResults) ... ok
> test_errors (skbio.stats.ordination.tests.test_correspondence_analysis.TestChiSquareDistance) ... ok
> Some random numbers. ... ok
> A tiny example from Legendre & Legendre 1998, p. 285. ... ok
> test_get_plot_point_colors_categorical_column (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_get_plot_point_colors_invalid_input (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... /usr/lib/python3/dist-packages/pandas/core/indexing.py:1027: FutureWarning: 
> Passing list-likes to .loc or [] with any missing label will raise
> KeyError in the future, you can use .reindex() as an alternative.
> 
> See the documentation here:
> https://pandas.pydata.org/pandas-docs/stable/indexing.html#deprecate-loc-reindex-listlike
>   return getattr(section, self.name)[new_key]
> ok
> test_get_plot_point_colors_no_df_or_column (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_get_plot_point_colors_numeric_column (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_plot_categorical_legend (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_plot_no_metadata (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_plot_with_categorical_metadata_and_plot_options (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_plot_with_invalid_axis_labels (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_plot_with_numeric_metadata_and_plot_options (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_png (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_repr_png (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_repr_svg (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_str (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_svg (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_validate_plot_axes_invalid_input (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_validate_plot_axes_valid_input (skbio.stats.ordination.tests.test_ordination_results.TestOrdinationResults) ... ok
> test_book_example_dataset (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok
> test_extensive (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok
> test_fsvd (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok
> test_fsvd_inplace (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok
> test_invalid_input (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok
> test_simple (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoA) ... ok
> test_from_seralized_results (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... ok
> test_mismatching_samples (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... ok
> test_not_a_pcoa (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... ok
> Test against a reference implementation from R's ape package ... ok
> test_pcoa_biplot_subset_input (skbio.stats.ordination.tests.test_principal_coordinate_analysis.TestPCoABiplot) ... ok
> test_shape (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAErrors) ... ok
> test_scaling1 (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAResults) ... ok
> test_scaling2 (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAResults) ... ok
> test_biplot_score (skbio.stats.ordination.tests.test_redundancy_analysis.TestRDAResults_biplot_score) ... ok
> test_center_distance_matrix_inplace (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_corr (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_corr_shape_mismatch (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_e_matrix (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_e_matrix_inplace (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_f_matrix (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_f_matrix_inplace (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_mean_and_std (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_mean_and_std_no_mean_no_std (skbio.stats.ordination.tests.test_util.TestUtils) ... ok
> test_ancom_alpha (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_alt_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_alternative_test (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_basic_counts (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_basic_counts_swapped (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_basic_proportions (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_duplicate_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_1_group (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_alpha (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_group_unique (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_groups (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_missing (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_multiple_groups (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_negative (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_not_implemented_multiple_comparisons_correction (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_size_mismatch (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_tau (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_theta (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_type (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_fail_zeros (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_letter_categories (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_multiple_comparisons (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_multiple_groups (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_no_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_no_signal (skbio.stats.tests.test_composition.AncomTests) ... /usr/lib/python3/dist-packages/scipy/stats/stats.py:2933: RuntimeWarning: invalid value encountered in double_scalars
>   f = msb / msw
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/stats/composition.py:1113: RuntimeWarning: invalid value encountered in less
>   W = (logratio_mat < alpha).sum(axis=1)
> ok
> test_ancom_noncontiguous (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_normal_data (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_percentile_order_unimportant (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_percentile_out_of_range (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_percentiles (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_percentiles_alt_categories (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_percentiles_iterator (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_percentiles_swapped (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_tau (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_theta (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_ancom_unbalanced (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_holm_bonferroni (skbio.stats.tests.test_composition.AncomTests) ... ok
> test_alr (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_alr_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_centralize (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_closure (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_closure_warning (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_clr (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_clr_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr_basis (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr_basis_isomorphism (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr_basis_one_dimension_error (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr_inv_basis (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_ilr_inv_basis_one_dimension_error (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_inner (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_multiplicative_replacement (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_perturb (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_perturb_inv (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_power (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_sbp_basis_elementwise (skbio.stats.tests.test_composition.CompositionTests) ... ok
> test_sbp_basis_gram_schmidt (skbio.stats.tests.test_composition.CompositionTests) ... ok
> get_trajectories returns the results of all categories ... ok
> get_trajectories returns the results of the provided category ... ok
> get_trajectories returns the correct weighted results ... ok
> test_to_file (skbio.stats.tests.test_gradient.CategoryResultsTests) ... ok
> test_get_trajectories (skbio.stats.tests.test_gradient.FirstDifferenceGradientANOVATests) ... ok
> test_get_trajectories_weighted (skbio.stats.tests.test_gradient.FirstDifferenceGradientANOVATests) ... ok
> test_to_file (skbio.stats.tests.test_gradient.GradientANOVAResultsTests) ... ok
> Should raise a NotImplementedError as this is a base class ... ok
> Should raise a NotImplementedError in usual execution as this is ... ok
> Should raise a RuntimeError if the user call _get_group_trajectories ... ok
> Should raise a NotImplementedError as this is a base class ... ok
> Correctly initializes the class attributes ... ok
> Raises an error with erroneous inputs ... ok
> Correctly generates the groups for trajectory_categories ... ok
> test_make_groups_natural_sorting (skbio.stats.tests.test_gradient.GradientANOVATests) ... ok
> Correctly normalizes the samples between coords and metadata_map ... ok
> Raises an error if coords and metadata_map does not have samples in ... ok
> Correctly performs the check before running ANOVA ... ok
> Correctly weights the vectors ... ok
> Raises an error with erroneous inputs ... ok
> test_weight_by_vector_single_element (skbio.stats.tests.test_gradient.GradientTests) ... ok
> test_to_file (skbio.stats.tests.test_gradient.GroupResultsTests) ... ok
> test_get_trajectories (skbio.stats.tests.test_gradient.TrajectoryGradientANOVATests) ... ok
> test_get_trajectories_weighted (skbio.stats.tests.test_gradient.TrajectoryGradientANOVATests) ... ok
> test_get_trajectories (skbio.stats.tests.test_gradient.WindowDifferenceGradientANOVATests) ... ok
> test_get_trajectories_weighted (skbio.stats.tests.test_gradient.WindowDifferenceGradientANOVATests) ... ok
> test_no_truncation (skbio.stats.tests.test_misc.PPrintStrsTests) ... ok
> test_non_default_delimiter_and_suffix (skbio.stats.tests.test_misc.PPrintStrsTests) ... ok
> test_truncation (skbio.stats.tests.test_misc.PPrintStrsTests) ... ok
> test__calculate_power (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__calculate_power_curve_alpha (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__calculate_power_curve_default (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__calculate_power_curve_ratio (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__calculate_power_curve_ratio_error (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__calculate_power_n (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__check_nans_clean_list (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__check_nans_list_nan (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__check_nans_nan (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__check_str_error (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__compare_distributions_all_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__compare_distributions_draw_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__compare_distributions_matched_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__compare_distributions_multiple_returns (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__compare_distributions_sample_counts_error (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__draw_paired_samples (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__get_min_size_relaxed (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__get_min_size_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__identify_sample_groups (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test__identify_sample_groups_not_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_nans_num (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_nans_str (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_sample_power_inputs (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_subsample_power_inputs_counts (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_subsample_power_inputs_matched_mode (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_subsample_power_inputs_ratio (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_check_subsample_power_inputs_test (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_confidence_bound_alpha (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_confidence_bound_axis_none (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_confidence_bound_default (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_confidence_bound_df (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_confidence_bound_nan (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_paired_subsample_fewer (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_paired_subsample_undefined (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_paired_subsamples_break (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_paired_subsamples_default (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_paired_subsamples_not_strict (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_subsample_paired_power (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_subsample_paired_power_multi_p (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_subsample_power_counts (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_subsample_power_defaults (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_subsample_power_matches (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> test_subsample_power_multi_p (skbio.stats.tests.test_power.PowerAnalysisTest) ... ok
> /usr/lib/python3/dist-packages/nose/util.py:453: DeprecationWarning: inspect.getargspec() is deprecated since Python 3.0, use inspect.signature() or inspect.getfullargspec()
>   inspect.getargspec(func)
> test_binf_is_none (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_isubsample_simple (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_max_lt_zero (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_min_gt_max (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_min_lt_zero (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_per_sample_sequences_complex (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_per_sample_sequences_min_seqs (skbio.stats.tests.test_subsample.ISubsampleTests) ... ok
> test_subsample_counts_invalid_input (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok
> test_subsample_counts_nonrandom (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok
> test_subsample_counts_with_replacement (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok
> test_subsample_counts_with_replacement_equal_n (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok
> test_subsample_counts_without_replacement (skbio.stats.tests.test_subsample.SubsampleCountsTests) ... ok
> test_build_trees (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok
> test_filter_clades (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok
> test_majority_rule (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok
> test_majority_rule_multiple_trees (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok
> test_majority_rule_tree_node_class (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok
> test_walk_clades (skbio.tree.tests.test_majority_rule.MajorityRuleTests) ... ok
> test_compute_collapsed_dm (skbio.tree.tests.test_nj.NjTests) ... ok
> test_compute_q (skbio.tree.tests.test_nj.NjTests) ... ok
> test_lowest_index (skbio.tree.tests.test_nj.NjTests) ... ok
> test_nj_dm1 (skbio.tree.tests.test_nj.NjTests) ... ok
> test_nj_dm2 (skbio.tree.tests.test_nj.NjTests) ... ok
> test_nj_dm3 (skbio.tree.tests.test_nj.NjTests) ... ok
> test_nj_error (skbio.tree.tests.test_nj.NjTests) ... ok
> test_nj_trivial (skbio.tree.tests.test_nj.NjTests) ... ok
> test_nj_zero_branch_length (skbio.tree.tests.test_nj.NjTests) ... ok
> test_pair_members_to_new_node (skbio.tree.tests.test_nj.NjTests) ... ok
> test_pair_members_to_new_node_zero_branch_length (skbio.tree.tests.test_nj.NjTests) ... ok
> Get the distance from a node to its ancestor ... ok
> Adopt a node! ... ok
> Get all the ancestors ... ok
> Append a node to a tree ... ok
> Make some ascii trees ... ok
> test_ascii_art_three_children (skbio.tree.tests.test_tree.TreeTests) ... ok
> Assign IDs to the tree ... ok
> assign_ids and index_tree should assign the same IDs ... ok
> test_bifurcate (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_bifurcate_with_subclass (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_bug_issue_1416 (skbio.tree.tests.test_tree.TreeTests) ... ok
> compare_rfd should return the Robinson Foulds distance ... ok
> compare_subsets should return the fraction of shared subsets ... ok
> test_compare_tip_distances (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_compare_tip_distances_no_common_tips (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_compare_tip_distances_sample (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_compare_tip_distances_single_common_tip (skbio.tree.tests.test_tree.TreeTests) ... ok
> copy a tree ... ok
> Get node counts ... ok
> test_create_caches_duplicate_tip_names (skbio.tree.tests.test_tree.TreeTests) ... ok
> Calculate descending branch_length ... ok
> Get the distance between two nodes ... ok
> test_distance_nontip (skbio.tree.tests.test_tree.TreeTests) ... ok
> Extend a few nodes ... ok
> Extend on the empty case should work ... ok
> Find a node in a tree ... ok
> test_find_all (skbio.tree.tests.test_tree.TreeTests) ... ok
> Find nodes by a function ... ok
> Find a node by id ... ok
> First implementation did not force the cache to be at the root ... ok
> test_from_taxonomy (skbio.tree.tests.test_tree.TreeTests) ... ok
> get_max_distance should get max tip distance across tree ... ok
> Basic TreeNode operations should work as expected ... ok
> Test if has children ... ok
> index_tree should produce correct index and node map ... ok
> index_tree handles single node tree ... ok
> test_invalidate_attr_caches (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_invalidate_lookup_caches (skbio.tree.tests.test_tree.TreeTests) ... ok
> see if we're at the root or not ... ok
> see if we're a tip or not ... ok
> iter wraps children ... ok
> Test level order traversal of the tree ... ok
> test_linkage_matrix (skbio.tree.tests.test_tree.TreeTests) ... ok
> TreeNode lowestCommonAncestor should return LCA for set of tips ... ok
> Get neighbors of a node ... ok
> returns observed nodes counts given vector of otu observation counts ... ok
> Pop off a node ... ok
> Pre and post order traversal of the tree ... ok
> test_pre_and_postorder_no_children (skbio.tree.tests.test_tree.TreeTests) ... ok
> Collapse single descendent nodes ... ok
> Collapse single descendent nodes ... ok
> test_prune_nested_single_descendent (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_prune_root_single_desc (skbio.tree.tests.test_tree.TreeTests) ... ok
> Remove nodes ... ok
> Remove nodes by function ... ok
> Remove a node by index ... ok
> Get the root! ... ok
> Form a new root ... ok
> Root at the midpoint ... ok
> test_root_at_midpoint_no_lengths (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_root_at_midpoint_tie (skbio.tree.tests.test_tree.TreeTests) ... ok
> set_max_distance sets MaxDistTips across tree ... ok
> Corresponds to #1223 ... ok
> Corresponds to #1077 ... ok
> Shear the nodes ... ok
> test_shear_prune_parent_dropped (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_shuffle_complex (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_shuffle_invalid_iter (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_shuffle_n_2 (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_shuffle_n_none (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_shuffle_names (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_shuffle_raises (skbio.tree.tests.test_tree.TreeTests) ... ok
> Get the siblings ... ok
> subset should return set of leaves that descends from node ... ok
> subsets should return all subsets descending from a set ... ok
> Get support value of a node. ... ok
> Test getting specifc tip distances  with tipToTipDistances ... ok
> test_tip_tip_distances_missing_length (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_tip_tip_distances_no_length (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_tip_tip_distances_non_tip_endpoints (skbio.tree.tests.test_tree.TreeTests) ... ok
> Tip traversal of tree ... ok
> See issue #1509 ... ok
> Convert a tree to arrays ... ok
> test_to_array_attrs (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_to_array_nan_length_value (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_to_taxonomy (skbio.tree.tests.test_tree.TreeTests) ... ok
> test_to_taxonomy_filter (skbio.tree.tests.test_tree.TreeTests) ... ok
> Unpack an internal node. ... ok
> Unpack internal nodes of a tree by a function. ... ok
> Do an unrooted_copy ... ok
> test_get_indentation_level (skbio.util.tests.test_decorator.TestBase) ... ok
> test_update_docstring (skbio.util.tests.test_decorator.TestBase) ... ok
> test_fails_on_instance (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok
> test_matches_classmethod (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok
> test_passes_args_kwargs (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok
> test_works_on_class (skbio.util.tests.test_decorator.TestClassOnlyMethod) ... ok
> test_getter_only (skbio.util.tests.test_decorator.TestClassProperty) ... ok
> test_deprecation_warning (skbio.util.tests.test_decorator.TestDeprecated) ... ok
> test_function_docstring (skbio.util.tests.test_decorator.TestDeprecated) ... ok
> test_function_output (skbio.util.tests.test_decorator.TestDeprecated) ... /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/util/_decorator.py:257: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g().
>   SkbioDeprecationWarning)
> ok
> test_function_signature (skbio.util.tests.test_decorator.TestDeprecated) ... ok
> test_missing_kwarg (skbio.util.tests.test_decorator.TestDeprecated) ... ok
> test_function_docstring (skbio.util.tests.test_decorator.TestExperimental) ... ok
> test_function_output (skbio.util.tests.test_decorator.TestExperimental) ... ok
> test_function_signature (skbio.util.tests.test_decorator.TestExperimental) ... ok
> test_missing_kwarg (skbio.util.tests.test_decorator.TestExperimental) ... ok
> test_doc_inherited (skbio.util.tests.test_decorator.TestOverrides) ... ok
> test_doc_not_inherited (skbio.util.tests.test_decorator.TestOverrides) ... ok
> test_raises_when_missing (skbio.util.tests.test_decorator.TestOverrides) ... ok
> test_function_docstring (skbio.util.tests.test_decorator.TestStable) ... ok
> test_function_output (skbio.util.tests.test_decorator.TestStable) ... ok
> test_function_signature (skbio.util.tests.test_decorator.TestStable) ... ok
> test_missing_kwarg (skbio.util.tests.test_decorator.TestStable) ... ok
> test_invalid_n (skbio.util.tests.test_misc.CardinalToOrdinalTests) ... ok
> test_valid_range (skbio.util.tests.test_misc.CardinalToOrdinalTests) ... ok
> test_even_split (skbio.util.tests.test_misc.ChunkStrTests) ... ok
> test_invalid_n (skbio.util.tests.test_misc.ChunkStrTests) ... ok
> test_no_split (skbio.util.tests.test_misc.ChunkStrTests) ... ok
> test_uneven_split (skbio.util.tests.test_misc.ChunkStrTests) ... ok
> test_callable (skbio.util.tests.test_misc.ResolveKeyTests) ... ok
> test_index (skbio.util.tests.test_misc.ResolveKeyTests) ... ok
> test_wrong_type (skbio.util.tests.test_misc.ResolveKeyTests) ... ok
> test_safe_md5 (skbio.util.tests.test_misc.SafeMD5Tests) ... ok
> test_all_duplicates (skbio.util.tests.test_misc.TestFindDuplicates) ... ok
> test_empty_input (skbio.util.tests.test_misc.TestFindDuplicates) ... ok
> test_many_duplicates (skbio.util.tests.test_misc.TestFindDuplicates) ... ok
> test_mixed_types (skbio.util.tests.test_misc.TestFindDuplicates) ... ok
> test_no_duplicates (skbio.util.tests.test_misc.TestFindDuplicates) ... ok
> test_one_duplicate (skbio.util.tests.test_misc.TestFindDuplicates) ... ok
> test_copy (skbio.util.tests.test_misc.TestMiniRegistry) ... ok
> test_decoration (skbio.util.tests.test_misc.TestMiniRegistry) ... ok
> test_everything (skbio.util.tests.test_misc.TestMiniRegistry) ... ok
> test_equal (skbio.util.tests.test_testing.TestAssertDataFrameAlmostEqual) ... ok
> test_not_equal (skbio.util.tests.test_testing.TestAssertDataFrameAlmostEqual) ... ok
> test_assert_ordination_results_equal (skbio.util.tests.test_testing.TestAssertOrdinationResultsEqual) ... ok
> test_equal (skbio.util.tests.test_testing.TestAssertSeriesAlmostEqual) ... ok
> test_not_equal (skbio.util.tests.test_testing.TestAssertSeriesAlmostEqual) ... ok
> test_get_data_path (skbio.util.tests.test_testing.TestGetDataPath) ... ok
> test_column_almost_zero (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> test_column_zeros (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> test_easy_already_equal (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> test_easy_different (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> test_hard (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> We don't want a value that might be negative due to ... ok
> test_shapes_and_nonarray_input (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> Taking abs value of everything would lead to false ... ok
> test_zeros (skbio.util.tests.test_testing.TestNormalizeSigns) ... ok
> test_add_line (skbio.tests.test_base.TestElasticLines) ... ok
> test_add_lines (skbio.tests.test_base.TestElasticLines) ... ok
> test_add_separator (skbio.tests.test_base.TestElasticLines) ... ok
> test_empty (skbio.tests.test_base.TestElasticLines) ... ok
> test_no_instantiation (skbio.tests.test_base.TestSkbioObject) ... ok
> test_contains (skbio.tests.test_workflow.ExistsTests) ... ok
> test_call (skbio.tests.test_workflow.NotExecutedTests) ... ok
> test_contains (skbio.tests.test_workflow.NotNoneTests) ... ok
> test_dec (skbio.tests.test_workflow.PriorityTests) ... ok
> test_methodb1 (skbio.tests.test_workflow.RequiresTests) ... ok
> test_methodb2_accept (skbio.tests.test_workflow.RequiresTests) ... ok
> test_methodb2_ignore (skbio.tests.test_workflow.RequiresTests) ... ok
> test_not_none_avoid (skbio.tests.test_workflow.RequiresTests) ... ok
> test_not_none_execute (skbio.tests.test_workflow.RequiresTests) ... ok
> test_validdata (skbio.tests.test_workflow.RequiresTests) ... ok
> test_all_wf_methods (skbio.tests.test_workflow.WorkflowTests) ... ok
> test_call_AC_fail (skbio.tests.test_workflow.WorkflowTests) ... ok
> test_call_AC_fail_noshort (skbio.tests.test_workflow.WorkflowTests) ... ok
> test_call_AC_no_fail (skbio.tests.test_workflow.WorkflowTests) ... ok
> test_debug_trace (skbio.tests.test_workflow.WorkflowTests) ... ok
> test_init (skbio.tests.test_workflow.WorkflowTests) ... ok
> test_init_reserved_attributes (skbio.tests.test_workflow.WorkflowTests) ... ok
> 
> ======================================================================
> ERROR: test_embl_to_gb (skbio.io.format.tests.test_embl.Convertertest)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 863, in test_embl_to_gb
>     embl = DNA.read(self.single_rna_simple_fp, format="embl")
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 652, in read
>     return registry.read(file, into=cls, format=format, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 513, in read
>     return self._read_ret(file, format, into, verify, kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 520, in _read_ret
>     return reader(file, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 553, in _embl_to_dna
>     return _construct(record, DNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_gb_to_embl (skbio.io.format.tests.test_embl.Convertertest)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 834, in test_gb_to_embl
>     genbank = DNA.read(self.genbank_fp, format="genbank")
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 652, in read
>     return registry.read(file, into=cls, format=format, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 513, in read
>     return self._read_ret(file, format, into, verify, kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 520, in _read_ret
>     return reader(file, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 382, in _genbank_to_dna
>     return _construct(record, DNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_embl_to_dna (skbio.io.format.tests.test_embl.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 633, in test_embl_to_dna
>     obs = _embl_to_dna(self.multi_fp, seq_num=i+1)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 553, in _embl_to_dna
>     return _construct(record, DNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_embl_to_generator (skbio.io.format.tests.test_embl.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 609, in test_embl_to_generator
>     for i, obs in enumerate(_embl_to_generator(self.multi_fp)):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 1008, in wrapped_reader
>     yield from reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 539, in _embl_to_generator
>     yield _construct(record, constructor, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_embl_to_generator_single (skbio.io.format.tests.test_embl.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 589, in test_embl_to_generator_single
>     positional_metadata=self.single[2], lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_embl_to_rna (skbio.io.format.tests.test_embl.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 624, in test_embl_to_rna
>     obs = _embl_to_rna(self.single_rna_fp)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 560, in _embl_to_rna
>     return _construct(record, RNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 626, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs).transcribe()
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_embl_to_sequence (skbio.io.format.tests.test_embl.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 617, in test_embl_to_sequence
>     obs = _embl_to_sequence(self.multi_fp, seq_num=i+1)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 546, in _embl_to_sequence
>     return _construct(record, Sequence, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_feature_level_products (skbio.io.format.tests.test_embl.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 661, in test_feature_level_products
>     obs = _embl_to_rna(self.feature_level_fp)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 560, in _embl_to_rna
>     return _construct(record, RNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 626, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs).transcribe()
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_dna (skbio.io.format.tests.test_embl.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 809, in test_roundtrip_dna
>     _dna_to_embl(_embl_to_dna(self.single_rna_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 553, in _embl_to_dna
>     return _construct(record, DNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_generator (skbio.io.format.tests.test_embl.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 789, in test_roundtrip_generator
>     _generator_to_embl(_embl_to_generator(self.multi_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 1082, in wrapped_writer
>     writer_function(obj, fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 576, in _generator_to_embl
>     for obj_i in obj:
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 1008, in wrapped_reader
>     yield from reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 539, in _embl_to_generator
>     yield _construct(record, constructor, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_rna (skbio.io.format.tests.test_embl.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 799, in test_roundtrip_rna
>     _rna_to_embl(_embl_to_rna(self.single_rna_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 560, in _embl_to_rna
>     return _construct(record, RNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 626, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs).transcribe()
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_sequence (skbio.io.format.tests.test_embl.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 823, in test_roundtrip_sequence
>     _sequence_to_embl(_embl_to_sequence(self.single_rna_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 546, in _embl_to_sequence
>     return _construct(record, Sequence, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/embl.py", line 629, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_generator_to_embl (skbio.io.format.tests.test_embl.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 709, in test_generator_to_embl
>     obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_rna_to_embl (skbio.io.format.tests.test_embl.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_embl.py", line 762, in test_rna_to_embl
>     obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fasta_to_any_sequence (skbio.io.format.tests.test_fasta.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 275, in setUp
>     lowercase='introns'),
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fasta_to_generator_invalid_files (skbio.io.format.tests.test_fasta.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 275, in setUp
>     lowercase='introns'),
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fasta_to_generator_valid_files (skbio.io.format.tests.test_fasta.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 275, in setUp
>     lowercase='introns'),
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fasta_to_tabular_msa (skbio.io.format.tests.test_fasta.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 275, in setUp
>     lowercase='introns'),
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fasta_to_tabular_msa_no_constructor (skbio.io.format.tests.test_fasta.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 275, in setUp
>     lowercase='introns'),
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_any_sequence_to_fasta (skbio.io.format.tests.test_fasta.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 666, in setUp
>     lowercase='introns')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_any_sequences_to_fasta (skbio.io.format.tests.test_fasta.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 666, in setUp
>     lowercase='introns')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_generator_to_fasta_invalid_input (skbio.io.format.tests.test_fasta.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 666, in setUp
>     lowercase='introns')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_generator_to_fasta_mixed_qual_scores (skbio.io.format.tests.test_fasta.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 666, in setUp
>     lowercase='introns')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_generator_to_fasta_no_qual (skbio.io.format.tests.test_fasta.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 666, in setUp
>     lowercase='introns')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_generator_to_fasta_with_qual (skbio.io.format.tests.test_fasta.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fasta.py", line 666, in setUp
>     lowercase='introns')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fastq_to_generator_valid_files (skbio.io.format.tests.test_fastq.TestReaders)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 316, in test_fastq_to_generator_valid_files
>     for c in components]
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 316, in <listcomp>
>     for c in components]
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fastq_to_sequence (skbio.io.format.tests.test_fastq.TestReaders)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 389, in test_fastq_to_sequence
>     **expected_kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_fastq_to_tabular_msa (skbio.io.format.tests.test_fastq.TestReaders)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 437, in test_fastq_to_tabular_msa
>     for c in components])
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 437, in <listcomp>
>     for c in components])
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_sequence_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 513, in test_sequence_to_fastq_kwargs_passed
>     **observed_kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_tabular_msa_to_fastq_kwargs_passed (skbio.io.format.tests.test_fastq.TestWriters)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 531, in test_tabular_msa_to_fastq_kwargs_passed
>     for c in components])
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_fastq.py", line 531, in <listcomp>
>     for c in components])
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_genbank_to_dna (skbio.io.format.tests.test_genbank.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 281, in test_genbank_to_dna
>     obs = _genbank_to_dna(self.multi_fp, seq_num=i+1)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 382, in _genbank_to_dna
>     return _construct(record, DNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_genbank_to_generator (skbio.io.format.tests.test_genbank.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 257, in test_genbank_to_generator
>     for i, obs in enumerate(_genbank_to_generator(self.multi_fp)):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 1008, in wrapped_reader
>     yield from reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 370, in _genbank_to_generator
>     yield _construct(record, constructor, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_genbank_to_protein (skbio.io.format.tests.test_genbank.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 290, in test_genbank_to_protein
>     obs = _genbank_to_protein(self.multi_fp, seq_num=i+1)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 394, in _genbank_to_protein
>     return _construct(record, Protein, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_genbank_to_rna (skbio.io.format.tests.test_genbank.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 272, in test_genbank_to_rna
>     obs = _genbank_to_rna(self.single_rna_fp)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 388, in _genbank_to_rna
>     return _construct(record, RNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 439, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs).transcribe()
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_genbank_to_sequence (skbio.io.format.tests.test_genbank.ReaderTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 265, in test_genbank_to_sequence
>     obs = _genbank_to_sequence(self.multi_fp, seq_num=i+1)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 376, in _genbank_to_sequence
>     return _construct(record, Sequence, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_dna (skbio.io.format.tests.test_genbank.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 377, in test_roundtrip_dna
>     _dna_to_genbank(_genbank_to_dna(self.single_rna_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 382, in _genbank_to_dna
>     return _construct(record, DNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_generator (skbio.io.format.tests.test_genbank.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 357, in test_roundtrip_generator
>     _generator_to_genbank(_genbank_to_generator(self.multi_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 1082, in wrapped_writer
>     writer_function(obj, fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 399, in _generator_to_genbank
>     for obj_i in obj:
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 1008, in wrapped_reader
>     yield from reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 370, in _genbank_to_generator
>     yield _construct(record, constructor, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_protein (skbio.io.format.tests.test_genbank.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 387, in test_roundtrip_protein
>     _protein_to_genbank(_genbank_to_protein(self.single_lower_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 394, in _genbank_to_protein
>     return _construct(record, Protein, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_rna (skbio.io.format.tests.test_genbank.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 367, in test_roundtrip_rna
>     _rna_to_genbank(_genbank_to_rna(self.single_rna_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 388, in _genbank_to_rna
>     return _construct(record, RNA, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 439, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs).transcribe()
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_roundtrip_sequence (skbio.io.format.tests.test_genbank.RoundtripTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 397, in test_roundtrip_sequence
>     _sequence_to_genbank(_genbank_to_sequence(self.single_rna_fp), fh)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/registry.py", line 998, in wrapped_reader
>     return reader_function(fhs[-1], **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 376, in _genbank_to_sequence
>     return _construct(record, Sequence, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/genbank.py", line 442, in _construct
>     seq, metadata=md, interval_metadata=imd, **kwargs)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_dna_protein_to_genbank (skbio.io.format.tests.test_genbank.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 332, in test_dna_protein_to_genbank
>     seq, md, interval_metadata=imd, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_rna_to_genbank (skbio.io.format.tests.test_genbank.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 344, in test_rna_to_genbank
>     obj = constructor(seq, md, interval_metadata=imd, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_sequence_to_genbank (skbio.io.format.tests.test_genbank.WriterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/io/format/tests/test_genbank.py", line 317, in test_sequence_to_genbank
>     obj = Sequence(seq, md, interval_metadata=imd, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_lowercase_all_lowercase (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_grammared_sequence.py", line 219, in test_init_lowercase_all_lowercase
>     seq = ExampleGrammaredSequence(s, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_lowercase_mixed_case (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_grammared_sequence.py", line 228, in test_init_lowercase_mixed_case
>     seq = ExampleGrammaredSequence(s, lowercase=True)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_grammared_sequence.py", line 323, in __init__
>     interval_metadata, lowercase)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_as_slice_if_single_index (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_bad_how (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_default_how (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_inner_missing (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_inner_simple (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_on_bad_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_on_empty_iterator (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_one_seq_has_none_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_outer_missing (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_outer_simple (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_strict_fail (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_strict_many (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_concat_strict_simple (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_contains (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_contains_sequence_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_copy_preserves_read_only_flag_on_bytes (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_copy_with_metadata_deep (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_copy_with_metadata_shallow (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_copy_without_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_count (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_count_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_deepcopy_memo_is_respected (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_and_ne (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_interval_metadata_mismatch (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_positional_metadata_mismatch (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_sequence_mismatch (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_sequences_from_different_sources_compare_equal (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_sequences_with_metadata_compare_equal (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_sequences_without_metadata_compare_equal (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_eq_type_mismatch (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_find_with_regex (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_find_with_regex_ignore (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_find_with_regex_ignore_index_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_find_with_regex_ignore_no_difference (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_find_with_regex_no_groups (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_find_with_regex_string_as_input (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_chars_varied_type (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_equivalent_to_kmer_frequencies_k_of_1 (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_invalid_chars (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_observed_chars (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_passing_observed_chars_equivalent_to_default (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_frequencies_specified_chars (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_drops_interval_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_empty_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_gives_new_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_boolean_vector_has_qual (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_boolean_vector_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_empty_indices_empty_seq_no_pos_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_empty_indices_non_empty_seq_no_pos_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_int_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_int_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_invalid (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_iterable_of_mixed_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_iterable_of_mixed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_numpy_index_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_numpy_index_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_slice_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_slice_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_tuple_of_mixed_no_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_tuple_of_mixed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_getitem_with_tuple_of_mixed_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_hash (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_index (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_index_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_default_parameters (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_from_contiguous_sequence_bytes_view (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_from_non_descendant_sequence_object (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_from_noncontiguous_sequence_bytes_view (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_from_sequence_object (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_invalid_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_multiple_character_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_no_copy_of_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_nondefault_parameters (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_init_single_character_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_is_single_index (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_contiguous_boolean_vector (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_contiguous_index_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_contiguous_iterable_slices (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_contiguous_with_invert (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_contiguous_with_max_length (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_different_sequences (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_different_sequences_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_empty_sequence_with_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_invalid_k (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_invalid_k_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_with_overlap (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_kmers_with_overlap_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_iter_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_kmer_frequencies (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_kmer_frequencies_empty_sequence (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_kmer_frequencies_floating_point_precision (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_kmer_frequencies_relative (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_len (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_lowercase_array_key (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_lowercase_mungeable_key (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_match_frequency (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_match_frequency_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_match_frequency_relative (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_match_frequency_unequal_length (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_matches (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_matches_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_matches_unequal_length (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatch_frequence_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatch_frequency (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatch_frequency_relative (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatch_frequency_unequal_length (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatches (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatches_on_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_mismatches_unequal_length (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_bytestring_return_bytes (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_bytestring_unicode_out_of_ascii_range (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_invalid_bool_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_invalid_index_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_invalid_iterable (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_invalid_string (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_valid_bool_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_valid_index_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_valid_iterable (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_munge_to_index_array_valid_string (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_nonzero (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_observed_chars_property (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_does_not_mutate_original (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_index_array (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_index_in_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_invalid_char_error (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_invalid_char_for_type_error (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_iterable_slices (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_non_single_character_error (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_sanity (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_with_bytes (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_with_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_replace_with_subclass (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_repr (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_reversed_has_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_reversed_no_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_sequence_numpy_compatibility (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_single_index_to_slice (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_slice_positional_metadata (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_str (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> ERROR: test_values_property (skbio.sequence.tests.test_sequence.TestSequence)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_sequence.py", line 81, in setUp
>     self.lowercase_seq = Sequence('AAAAaaaa', lowercase='key')
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 647, in __init__
>     self._convert_to_uppercase(lowercase_mask)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 676, in _convert_to_uppercase
>     with self._byte_ownership():
>   File "/usr/lib/python3.7/contextlib.py", line 112, in __enter__
>     return next(self.gen)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/_sequence.py", line 2191, in _byte_ownership
>     self._bytes.flags.writeable = True
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> ======================================================================
> FAIL: test_init_lowercase_no_validation (skbio.sequence.tests.test_grammared_sequence.TestGrammaredSequence)
> ----------------------------------------------------------------------
> ValueError: cannot set WRITEABLE flag to True of this array
> 
> During handling of the above exception, another exception occurred:
> 
> Traceback (most recent call last):
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build/skbio/sequence/tests/test_grammared_sequence.py", line 238, in test_init_lowercase_no_validation
>     ExampleGrammaredSequence(s, lowercase=True)
> AssertionError: "character.*'R'" does not match "cannot set WRITEABLE flag to True of this array"
> 
> ----------------------------------------------------------------------
> Ran 2340 tests in 42.261s
> 
> FAILED (SKIP=30, errors=193, failures=1)
> E: pybuild pybuild:338: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_skbio/build; python3.7 -m nose -v 
> dh_auto_test: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13

The full build log is available from:
   http://aws-logs.debian.net/2018/12/29/python-skbio_0.5.5-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.