[Debian-med-packaging] Bug#890303: htslib: autopokgtest failure

Graham Inggs ginggs at debian.org
Tue Feb 13 09:28:12 UTC 2018


Source: htslib
Version: 1.7-1
User: ubuntu-devel at lists.ubuntu.com
Usertags: origin-ubuntu bionic autopkgtest

Hi Maintainer

Since the upload of 1.7-1, htslib's autopkgtests have been
failing [1] with the following error:

autopkgtest [02:32:04]: test run-unit-test: [-----------------------
make: ./version.sh: Command not found
make: ./version.sh: Command not found
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c
echo '#define HTS_VERSION ""' > version.h
gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time 
-D_FORTIFY_SOURCE=2 -c -o hts.o hts.c
make: *** No rule to make target 'os/rand.c', needed by 'hts_os.o'.  Stop.
autopkgtest [02:32:10]: test run-unit-test: -----------------------]
autopkgtest [02:32:10]: test run-unit-test:  - - - - - - - - - - results 
- - - - - - - - - -
run-unit-test        FAIL non-zero exit status 2

Regards
Graham


[1] https://ci.debian.net/packages/h/htslib/unstable/amd64/



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