[Debian-med-packaging] Bug#890748: python-pysam: autopkgtest failures in pbsuite, python-pbcore

[Andreas Tille]

Control: tags -1 help

Hi Graham,

thanks for this bug report.

On Sun, Feb 18, 2018 at 01:24:21PM +0200, Graham Inggs wrote:
> 
> ImportError: libchtslib.so: cannot open shared object file: No such
> file or directory

I checked the content of the deb packages via

$ dpkg -L python-pysam python3-pysam | grep libchtslib.*so
/usr/lib/python2.7/dist-packages/pysam/libchtslib.x86_64-linux-gnu.so
/usr/lib/python3/dist-packages/pysam/libchtslib.cpython-36m-x86_64-linux-gnu.so

and see that there are files fitting the libchtslib.*so pattern.
I have no idea how dynamic linking in this case works - do you
think some additional symlinks

  ln -s libchtslib.x86_64-linux-gnu.so /usr/lib/python2.7/dist-packages/pysam/libchtslib.so
  ln -s libchtslib.cpython-36m-x86_64-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libchtslib.so

might be needed to provide the exact name?

Kind regards

      Andreas.

-- 
http://fam-tille.de