[Debian-med-packaging] Bug#891745: libseqlib-dev: /usr/include/SeqLib/BamWalker.h includes file locations no longer provided by libhts-dev

[Adrian Bunk]

Package: libseqlib-dev
Version: 1.1.1+dfsg-3
Severity: serious
Control: affects -1 src:freebayes

freebayes FTBFS:

https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/freebayes.html

...
g++ -O3 -D_FILE_OFFSET_BITS=64 -g -std=gnu++11 -I../ttmath  -I/usr/include/bamtools `pkg-config --cflags libvcflib` `pkg-config --cflags libseqlib` `pkg-config --cflags htslib` `pkg-config --cflags jsoncpp` -c DataLikelihood.cpp
In file included from /usr/include/SeqLib/BamReader.h:6:0,
                 from LeftAlign.h:99,
                 from AlleleParser.h:30,
                 from DataLikelihood.h:20,
                 from DataLikelihood.cpp:1:
/usr/include/SeqLib/BamWalker.h:15:10: fatal error: htslib/cram/cram.h: No such file or directory
 #include "htslib/cram/cram.h"
          ^~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Makefile:127: DataLikelihood.o] Error 1