[Debian-med-packaging] New CamiTK 4.1.2 release

[Andreas Tille]

Hi Emmanuel,

my setup here is a system running Debian testing and a pbuilder sid
chroot.  BTW, you only need to use "sudo" when updating the sid chroot -
not to build the package itself.  If its a permission issue I see a
slight chance that your "sudo" in front of the build command might
change something.

On Thu, Jul 19, 2018 at 03:18:32PM +0200, Emmanuel Promayon wrote:
> Dear Andreas,
> 
> I managed to reproduce the error you got (but with stretch build
> environment)!
> 
> On the stretch cowbuild, the test fails because there are some error/warning
> messages sent to stdout during the execution of "camitk-config" application
> (that is built by the package):
> 
> > 136: libEGL warning: DRI2: failed to open swrast (search paths
> /usr/lib/x86_64-linux-gnu/dri:${ORIGIN}/dri:/usr/lib/dri)
> > 136: libEGL warning: DRI2: failed to open swrast (search paths
> /usr/lib/x86_64-linux-gnu/dri:${ORIGIN}/dri:/usr/lib/dri)
> > 136: process 13597: D-Bus library appears to be incorrectly set up; failed
> to read machine uuid: Failed to open "/etc/machine-id": No such file or
> directory
> > 136: See the manual page for dbus-uuidgen to correct this issue.
> 
> Andreas, can you confirm you have a similar error message in the build you
> tried on yesterday? Or send me the result of
> cat build-2018-07-19-14:38.log | grep "^136:"

$ grep "^136:" camitk_4.1.2-1_amd64.build 
136: Test command: /bin/bash "/build/camitk-4.1.2/sdk/applications/config/testing/config-test.sh" "-inbuild" "/build/camitk-4.1.2/camitk-build"
136: Test timeout computed to be: 1800
136: ========== checking camitk configuration ==========
136: ===== Testing in build dir /build/camitk-4.1.2/camitk-build =====
136: ===== Check OS =====
136: ===== Uname is Linux ===== OS is Linux =====
136: ===== Configuring xvfb =====
136: PID of Xvfb: 30441
136: ===== Checking bin/camitk-config =====
136: [OK]
136: ===== Get CamiTK configuration =====
136: ===== config-output =====
136: QStandardPaths: XDG_RUNTIME_DIR points to non-existing path '/run/user/1454', please create it with 0700 permissions.
136: _IceTransSocketINETConnect() no usable address for sputnik:36783
136: Qt: Session management error: Could not open network socket
136: - CamiTK version........................... CamiTK 4.1.2
136: - CamiTK Short Version..................... camitk-4.1
136: - CamiTK SO NAME........................... 4
136: - Operating System......................... LINUX
136: - Build type............................... RELEASE
136: - QT Version............................... 5.10.1
136: - VTK Version.............................. 6.3.0
136: - Global Installation Directory [G]........ [not globally installed: using current working directory as repository]
136: - Local Installation Directory [L]......... /nonexistent/.config/CamiTK
136: - Current Working Directory [W]............ /build/camitk-4.1.2/camitk-build
136: - Test Data Directory...................... /build/camitk-4.1.2/camitk-build/share/camitk-4.1/testdata
136: - Component Extension Directories.......... /build/camitk-4.1.2/camitk-build/lib/camitk-4.1/components
136: - Action Extension Directories............. /build/camitk-4.1.2/camitk-build/lib/camitk-4.1/actions
136: - Number of Component Extensions........... 14 (locations: 0 global, 0 local, 14 in working directory, 0 manually installed by user)
136: - Number of File Extensions Supported...... 37
136: - Number of Action Extensions.............. 27 (locations: 0 global, 0 local, 27 in working directory, 0 manually installed by user)
136: - Number of Actions........................ 105
136: - Registered components:
136:   - [W] Alias Wavefront OBJ Component...... obj
136:   - [W] ItkImages Component................ hdr, spr, gipl, pic, lsm, nrrd, hdr.gz, nii, nii.gz, img, img.gz
136:   - [W] MML Component...................... mml, scn
136:   - [W] Msh Component...................... msh
136:   - [W] Off Component...................... off
136:   - [W] PML Component...................... pml
136:   - [W] Pick Me Component.................. pickme
136:   - [W] STL Component...................... stl, STL
136:   - [W] Testing Abort Component............ abort
136:   - [W] Testing Mixed Component............ mixed
136:   - [W] VRML 2 Component................... vrml, wrl
136:   - [W] VTK Component...................... vtk
136:   - [W] vtkImages Component................ jpg, png, tiff, tif, bmp, pbm, pgm, ppm, mhd, mha, raw
136:   - [W] DICOM.............................. directory
136: - Registered actions:
136:   - [W] Application Level Actions.......... 21 actions
136:   - [W] AverageVoxelValuesExtension........ 1 actions
136:   - [W] Basic Mesh Extension............... 9 actions
136:   - [W] Basic Picking Tutorial............. 1 actions
136:   - [W] Basic Topology..................... 2 actions
136:   - [W] BoxVOIExtension.................... 1 actions
136:   - [W] Frame Edition Extension............ 1 actions
136:   - [W] ITK Filters........................ 14 actions
136:   - [W] ITK Segmentation................... 3 actions
136:   - [W] Image LUT.......................... 1 actions
136:   - [W] ImageAcquisitionActionExtension.... 7 actions
136:   - [W] MML................................ 2 actions
136:   - [W] Mesh Point Data.................... 1 actions
136:   - [W] Mesh Processing.................... 17 actions
136:   - [W] Mesh Selection..................... 1 actions
136:   - [W] MultiPickingExtension.............. 1 actions
136:   - [W] PMLExploreExtension................ 2 actions
136:   - [W] Pixel Color Changer................ 1 actions
136:   - [W] PropertiesExtension................ 3 actions
136:   - [W] Reconstruction..................... 1 actions
136:   - [W] Reorient Image Extension........... 1 actions
136:   - [W] ResampleExtension.................. 1 actions
136:   - [W] Shaker Extension................... 3 actions
136:136: - Number of Component Extensions........... 14 (locations: 0 global, 0 local, 14 in working directory, 0 manually installed by user)
136: - Number of File Extensions Supported...... 37
136: - Number of Action Extensions.............. 27 (locations: 0 global136: , please create it with 0700 permissions. _IceTransSocketINETConnect() no usable address for sputnik:36783 Qt: Session management error: Could not open network socket - CamiTK version........................... CamiTK 4.1.2 - CamiTK Short Version..................... camitk-4.1 - CamiTK SO NAME........................... 4 - Operating System......................... LINUX - Build type............................... RELEASE - QT Version............................... 5.10.1 - VTK Version.............................. 6.3.0 - Global Installation Directory [G]........ [not globally installed: using current working directory as repository] - Local Installation Directory [L]......... /nonexistent/.config/CamiTK - Current Working Directory [W]............ /build/camitk-4.1.2/camitk-build - Test Data Directory...................... /build/camitk-4.1.2/camitk-build/share/camitk-4.1/testdata - Component Extension Directories.......... /build/camitk-4.1.2/camitk-build/lib/camitk-4.1/components - Action Extension Directories............. /build/camitk-4.1.2/camitk-build/lib/camitk-4.1/actions - Number of Component Extensions........... 14 (locations: 0 global, 0 local, 14 in working directory, 0 manually installed by user) - Number of File Extensions Supported...... 37 - Number of Action Extensions.............. 27 (locations: 0 global, 0 local, 27 in working directory, 0 manually installed by user) - Number of Actions........................ 105 - Registered components: - [W] Alias Wavefront OBJ Component...... obj - [W] ItkImages Component................ hdr, spr, gipl, pic, lsm, nrrd, hdr.gz, nii, nii.gz, img, img.gz - [W] MML Component...................... mml, scn - [W] Msh Component...................... msh - [W] Off Component...................... off - [W] PML Component...................... pml - [W] Pick Me Component.................. pickme - [W] STL Component...................... stl, STL - [W] Testing Abort Component............ abort - [W] Testing Mixed Component............ mixed - [W] VRML 2 Component................... vrml, wrl - [W] VTK Component...................... vtk - [W] vtkImages Component................ jpg, png, tiff, tif, bmp, pbm, pgm, ppm, mhd, mha, raw - [W] DICOM.............................. directory - Registered actions: - [W] Application Level Actions.......... 21 actions - [W] AverageVoxelValuesExtension........ 1 actions - [W] Basic Mesh Extension............... 9 actions - [W] Basic Picking Tutorial............. 1 actions - [W] Basic Topology..................... 2 actions - [W] BoxVOIExtension.................... 1 actions - [W] Frame Edition Extension............ 1 actions - [W] ITK Filters......136: , please create it with 0700 permissions. _IceTransSocketINETConnect() no usable address for sputnik:36783 Qt: Session management error: Could not open network socket - CamiTK version........................... CamiTK 4.1.2 - CamiTK Short Version..................... camitk-4.1 - CamiTK SO NAME........................... 4 - Operating System......................... LINUX - Build type............................... RELEASE - QT Version............................... 5.10.1 - VTK Version.............................. 6.3.0 - Global Installation Directory [G]........ [not globally installed: using current working directory as repository] - Local Installation Directory [L]......... /nonexistent/.config/CamiTK - Current Working Directory [W]............ /build/camitk-4.1.2/camitk-build - Test Data Directory...................... /build/camitk-4.1.2/camitk-build/share/camitk-4.1/testdata - Component Extension Directories.......... /build/camitk-4.1.2/camitk-build/lib/camitk-4.1/components - Action Extens136: ===== 1- Detected installed CamiTK version is: [with] aka [with] =====
136: Error: unknown version (release date: unknown version)
136: ===== 2- Number of extensions: 41 =====
136: Error: unexpected number of globally installed extensions (found 41 vs 12 expected)
136: ===== 3- Current Working Directory: /build/camitk-4.1.2/camitk-build =====
136: OK
136: ===== 4- Number of Component Extensions: 14 =====
136: Error: unexpected Number of Component Extensions (found 14 vs 12 expected)
136: ===== 5- Number of Action Extensions: 27 =====
136: Error: unexpected Number of Action Extensions (found 27 vs 71 expected)
136: ===== 6- Number of File Extensions Supported: 37 =====
136: Error: unexpected Number of File Extensions Supported (found 37 vs 35 expected)
136: ===== 7- Number of Actions: 105 =====
136: Error: unexpected Number of Actions (found 105 vs 81 expected)


Hope this helps - otherwise I'll send full build log.  But I'm
nearly on travel to DebConf very soon ... so please be patient.

Kind regards

       Andreas.




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