[Debian-med-packaging] Bug#902592: New version does not build

[Ghislain Vaillant]

I am away right now and can't investigate before two weeks.

Looks Cython related from a first look.

Ghis

Le ven. 29 juin 2018 à 11:17, Andreas Tille <andreas at fam-tille.de> a écrit :

> Hi Ghislain,
>
> since one of the Debian Med packages seems to be affected I tried to
> upgrade h5py (see Git repository).  Unfortunately it does not build:
>
> ...
> running build_ext
> Traceback (most recent call last):
>   File "setup.py", line 168, in <module>
>     cmdclass = CMDCLASS,
>   File "/usr/lib/python2.7/dist-packages/setuptools/__init__.py", line
> 129, in setup
>     return distutils.core.setup(**attrs)
>   File "/usr/lib/python2.7/distutils/core.py", line 151, in setup
>     dist.run_commands()
>   File "/usr/lib/python2.7/distutils/dist.py", line 953, in run_commands
>     self.run_command(cmd)
>   File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
>     cmd_obj.run()
>   File "/usr/lib/python2.7/distutils/command/build.py", line 128, in run
>     self.run_command(cmd_name)
>   File "/usr/lib/python2.7/distutils/cmd.py", line 326, in run_command
>     self.distribution.run_command(command)
>   File "/usr/lib/python2.7/distutils/dist.py", line 972, in run_command
>     cmd_obj.run()
>   File "/build/h5py-2.8.0/setup_build.py", line 156, in run
>     from Cython.Build import cythonize
>   File "/usr/lib/python2.7/dist-packages/Cython/Build/__init__.py", line
> 1, in <module>
>     from .Dependencies import cythonize
>   File "/usr/lib/python2.7/dist-packages/Cython/Build/Dependencies.py",
> line 36, in <module>
>     from ..Compiler.Main import Context, CompilationOptions,
> default_options
>   File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py", line
> 30, in <module>
>     from .Symtab import ModuleScope
>   File "/usr/lib/python2.7/dist-packages/Cython/Compiler/Symtab.py", line
> 19, in <module>
>     from . import PyrexTypes
>   File "/usr/lib/python2.7/dist-packages/Cython/Compiler/PyrexTypes.py",
> line 17, in <module>
>     from .Code import UtilityCode, LazyUtilityCode, TempitaUtilityCode
>   File "Cython/Compiler/Code.py", line 38, in init Cython.Compiler.Code
> ImportError: /usr/lib/python2.7/dist-packages/Cython/
> StringIOTree.x86_64-linux-gnu.so: undefined symbol: Py_InitModule4_64
> E: pybuild pybuild:336: build: plugin distutils failed with: exit code=1:
> /usr/bin/python-dbg setup.py build
> dh_auto_build: pybuild --build -i python{version}-dbg -p 2.7 returned exit
> code 13
> make[1]: *** [debian/rules:22: override_dh_auto_build] Error 25
> make[1]: Leaving directory '/build/h5py-2.8.0'
> make: *** [debian/rules:10: build] Error 2
> dpkg-buildpackage: error: debian/rules build gave error exit status 2
>
>
> Can you please have a look?
>
> Kind regards
>
>         Andreas.
>
> --
> http://fam-tille.de
>
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