[Debian-med-packaging] Bug#892522: ITP: r-bioc-bitseq -- transcript expression inference and analysis for RNA-seq data
Andreas Tille
tille at debian.org
Sat Mar 10 06:43:00 UTC 2018
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille at debian.org>
* Package name : r-bioc-bitseq
Version : 1.22.0
Upstream Author : Peter Glaus, Antti Honkela and Magnus Rattray
* URL : https://bioconductor.org/packages/BitSeq/
* License : Artistic-2.0
Programming Lang: GNU R
Description : transcript expression inference and analysis for RNA-seq data
The BitSeq package is targeted for transcript expression
analysis and differential expression analysis of RNA-seq data
in two stage process. In the first stage it uses Bayesian
inference methodology to infer expression of individual
transcripts from individual RNA-seq experiments. The second
stage of BitSeq embraces the differential expression analysis
of transcript expression. Providing expression estimates from
replicates of multiple conditions, Log-Normal model of the
estimates is used for inferring the condition mean transcript
expression and ranking the transcripts based on the likelihood
of differential expression.
Remark: This package is needed in BioLinux and thus a sensible target for
the Debian Med team. The actual packaging will be done by the r-pkg team
at
https://salsa.debian.org/r-pkg-team/r-bioc-bitseq
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