[Debian-med-packaging] seqan2_2.4.0+dfsg-8~bpo8+1_amd64.changes ACCEPTED into jessie-backports->backports-policy, jessie-backports

Fri Mar 30 15:04:53 UTC 2018

Accepted:

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Hash: SHA256

Format: 1.8
Date: Mon, 26 Mar 2018 11:38:05 +0200
Source: seqan2
Binary: seqan-apps libseqan2-dev
Architecture: source amd64 all
Version: 2.4.0+dfsg-8~bpo8+1
Distribution: jessie-backports
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Description:
 libseqan2-dev - C++ library for the analysis of biological sequences (development
 seqan-apps - C++ library for the analysis of biological sequences
Closes: 862484 877349 878933 882169 884548 890385
Changes:
 seqan2 (2.4.0+dfsg-8~bpo8+1) jessie-backports; urgency=medium
 .
   * Rebuild for jessie-backports.
 .
 seqan2 (2.4.0+dfsg-8) unstable; urgency=medium
 .
   * Fix AutoPkgTests. Miscellaneous cleanups of debian/rules.
   * Use seperate build directory for the -dev package so we can run cmake with
     -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY
 .
 seqan2 (2.4.0+dfsg-7) unstable; urgency=medium
 .
   * Split override_dh_install into -arch and -indep
 .
 seqan2 (2.4.0+dfsg-6) unstable; urgency=medium
 .
   * Retry building on mips*; patch adapted from Adrian Bunk <bunk at debian.org>
     Closes: #890385. Thanks!
   * Document CWL generation via README.source. Mark all CWL files as
     executable
   * Enable AutoPackageTests for seqan-apps
   * Applied 2 patches from upstream: add mandatory ctdVersion element,
     fix errors in manpage output
   * Suggest cwltool | cwl-runner.
 .
 seqan2 (2.4.0+dfsg-5) unstable; urgency=medium
 .
   * Ship CWL descriptions for a subset of seqan-apps
   * Give up on mips & mipsel due to lack of memory
 .
 seqan2 (2.4.0+dfsg-4) unstable; urgency=medium
 .
   * Update seqan-config.cmake installation location as per upstream:
     https://github.com/seqan/seqan/issues/2276
   * Drop mips* to -O2 from -O3
 .
 seqan2 (2.4.0+dfsg-3) unstable; urgency=medium
 .
   * Remove parallel building form mips{,el}
   * AMD64 is freezing up on the builders, drop max parallel builds to 2
 .
 seqan2 (2.4.0+dfsg-2) unstable; urgency=medium
 .
   * Drop mips{,el} down to 2 max parallel builds.
   * Latest release fixes the failing tests issue. (Closes: #884548)
 .
 seqan2 (2.4.0+dfsg-1) unstable; urgency=medium
 .
   * 2.4.0 is released!
   * Install seqan-2.pc to /usr/share/pkgconfig as it is arch independent
 .
 seqan2 (2.4.0~rc2+dfsg-1) experimental; urgency=medium
 .
   * Testing upstream's 3rd formal release candidate for 2.4.0
   * debian/rules: use --max-parallel to more cleanly limit parallel building
 .
 seqan2 (2.4.0~rc1+dfsg-2) experimental; urgency=medium
 .
   * debian/rules: Drop amd64, mips, mipsel to -j3 to save memory
 .
 seqan2 (2.4.0~rc1+dfsg-1) experimental; urgency=medium
 .
   * Testing upstream's 2nd formal release candidate for 2.4.0
 .
 seqan2 (2.4.0~rc0+dfsg-1) experimental; urgency=medium
 .
   * Testing upstream's formal release candidate
 .
 seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-2) experimental; urgency=medium
 .
   * enable asyncio on all archs as a test
   * disable parallel building on powerpcspe
 .
 seqan2 (2.3.2.001platform-issues10-6f85721+dfsg-1) experimental; urgency=medium
 .
   * Hopefully final update from upstream :-)
 .
 seqan2 (2.3.2.000platform-issues9-028fd79+dfsg-1) experimental; urgency=medium
 .
   * Another update from upstream
   * debian/rules: build flags simplification:
       - use DEB_*_MAINT_APPEND
       - pass -DNDEBUG -O3 as per upstream
       - drop -DSEQAN_BUILD_SYSTEM=DEVELOP as that is the default
 .
 seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-2) experimental; urgency=medium
 .
   * Force rebuild
 .
 seqan2 (2.3.2.000platform-issues8-6f85721+dfsg-1) experimental; urgency=medium
 .
   * Another update from upstream
 .
 seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-2) experimental; urgency=medium
 .
   [ Andreas Tille ]
   * Work around missing dir in indep-only builds
     Closes: #882169
 .
   [ Michael R. Crusoe ]
   * Cleanup from not pushing my changes
 .
 seqan2 (2.3.2.000platform-issues7-41f58c3+dfsg-1) experimental; urgency=medium
 .
    * Another update from upstream
 .
 seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-3) experimental; urgency=medium
 .
   * Typo fix
 .
 seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-2) experimental; urgency=medium
 .
   * Now try -O3 everywhere
   * Remove the sparc64 test code
   * Delete symlinks for apps that are skipped for a particular architecture
 .
 seqan2 (2.3.2.000platform-issues6-9cf5a69+dfsg-1) experimental; urgency=medium
 .
   * Skip yara on kfreebsd-i386
   * Try out -O2 on archs that had been previously -O1
   * Fix typo in bam2roi help text
   * From upstream: another round of changes for the problems that affect
     all big endian.
 .
 seqan2 (2.3.2.000platform-issues5-86390dc+dfsg-1) experimental; urgency=medium
 .
   * Another update from upstream including a tweak to sparc64
 .
 seqan2 (2.3.2.000platform-issues4-fba8744+dfsg-1) experimental; urgency=medium
 .
   * Another refresh from upstream's branch
   * Skip yara on armel, as well.
   * d/control: declare seqan2 can be built without root, R³:no.
 .
 seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-2) experimental; urgency=medium
 .
   * Skip yara on armhf & sh4.
   * Disable parallel building on armel
 .
 seqan2 (2.3.2.000platform-issues3-1d438c8+dfsg-1) experimental; urgency=medium
 .
   * require tests to pass everywhere
   * skip the razers{3,} and yara apps on mips{el,}
   * restore parallel build blocking only for armhf, sh4, and kfreebsd*
   * Another refresh from upstream, this time focusing on bam files
 .
 seqan2 (2.3.2.000platform-issues2-206d1f7+dfsg-1) experimental; urgency=medium
 .
   * Typo for CXXFLAGS: -O1 instead of -01
   * Another refresh from upstream in response to errors discovered via the
     Debian build machines.
 .
 seqan2 (2.3.2.000platform-issues1-66a8baf+dfsg-1) experimental; urgency=medium
 .
   * Refresh from upstream with additional fixes
 .
 seqan2 (2.3.2.000platform-issues0-8ae7bc0+dfsg1-1) experimental; urgency=medium
 .
   * Patch for mips64el from bunk at debian.org (Closes: #878933)
   * Temporarily enable all archs again
   * Upstream source is pre-2.4.0, remove patches that they have merged:
     short-description, spelling
   * Cleaned up per-arch settings in debian/rules
 .
 seqan2 (2.3.2+dfsg2-4) unstable; urgency=medium
 .
   * Work around missing dir in indep-only builds
     Closes: #882169
   * d/rules: drop --parallel which is redundant for debhelper 10
   * Do not generate manpages in arch indep builds (as done in
     experimental branch)
 .
 seqan2 (2.3.2+dfsg2-3) unstable; urgency=medium
 .
   * Patch for mips64el from bunk at debian.org (Closes: #878933)
   * Cleaned up per-arch settings in debian/rules
   * Disable parallel building on sh4
 .
 seqan2 (2.3.2+dfsg2-2) unstable; urgency=medium
 .
   * As per upstream, disable async-io for many platforms
   * Remove jinja2, python-nose, and dh-linktree dependencies as we are not yet
     building the docs
   * Switch to GitHub releases for HTTPS protection
 .
 seqan2 (2.3.2+dfsg2-1) unstable; urgency=medium
 .
   * Still not enough memory for seqan-apps on amrhf, disabling
   * seqan-apps: run tests post build, everywhere
 .
 seqan2 (2.3.2+dfsg-2) unstable; urgency=medium
 .
   * Re-enable armhf, h/t Ubuntu
   * Disabling armel again due to lack of memory on buildd. (Closes: #877349)
 .
 seqan2 (2.3.2+dfsg-1) unstable; urgency=medium
 .
   * New upstream release.
   * Re-enable armel, now that upstream bug fixed in
     https://gcc.gnu.org/bugzilla/show_bug.cgi?id=64735
   * removed debian/patches/skip-SEQAN_PKGCFG_CFLAGS, incorporated upstream
 .
 seqan2 (2.3.1+dfsg-5) unstable; urgency=medium
 .
   * Team upload.
   * Make build reproducible.
     Thanks to Chris Lamb for the patch.
     Closes: #862484
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Files:
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 e46af25473877cd5af56dd3c456973c1 30488 science optional seqan2_2.4.0+dfsg-8~bpo8+1.debian.tar.xz
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