[Debian-med-packaging] Bug#897493: paleomix: FTBFS: dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 returned exit code 13

[Lucas Nussbaum]

Source: paleomix
Version: 1.2.12-1
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20180502 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> # apply fix that seems to be needed due to improperly set
> # time zone in pbuilder
> sed -i~ 's/"MTime": "2005-07-07 08:50:00"/"MTime": "2005-07-07 06:50:00"/' tests/common_tests/makefile_test.py
> PATH=/<<PKGBUILDDIR>>/bin/:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games dh_auto_test
> I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7/build; python2.7 -m nose --exclude='(test_requirementobj__version__command_not_executable)'
> ............................................................F.F..F.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
> ======================================================================
> FAIL: atomiccmd_test.builder_test.test_java_builder__default__no_config
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
>     self.test(*self.arg)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7/build/tests/atomiccmd_test/builder_test.py", line 534, in test_java_builder__default__no_config
>     "-jar", "%(AUX_JAR)s"])
> AssertionError: Lists differ: ['java', '-server', '-Djava.io... != ['java', '-server', '-Djava.io...
> 
> First differing element 5:
> '-jar'
> '-Xmx4g'
> 
> Second list contains 1 additional elements.
> First extra element 7:
> '%(AUX_JAR)s'
> 
>   ['java',
>    '-server',
>    '-Djava.io.tmpdir=%(TEMP_DIR)s',
>    '-Djava.awt.headless=true',
>    '-XX:+UseSerialGC',
> +  '-Xmx4g',
>    '-jar',
>    '%(AUX_JAR)s']
> 
> ======================================================================
> FAIL: atomiccmd_test.builder_test.test_java_builder__defaults__call
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
>     self.test(*self.arg)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7/build/tests/atomiccmd_test/builder_test.py", line 545, in test_java_builder__defaults__call
>     "-jar", "%(AUX_JAR)s"])
> AssertionError: Lists differ: ['java', '-server', '-Djava.io... != ['java', '-server', '-Djava.io...
> 
> First differing element 5:
> '-jar'
> '-Xmx4g'
> 
> Second list contains 1 additional elements.
> First extra element 7:
> '%(AUX_JAR)s'
> 
>   ['java',
>    '-server',
>    '-Djava.io.tmpdir=/disk/tmp',
>    '-Djava.awt.headless=true',
>    '-XX:+UseSerialGC',
> +  '-Xmx4g',
>    '-jar',
>    '%(AUX_JAR)s']
> 
> ======================================================================
> FAIL: atomiccmd_test.builder_test.test_java_builder__multithreaded_gc
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
>     self.test(*self.arg)
>   File "/<<PKGBUILDDIR>>/.pybuild/cpython2_2.7/build/tests/atomiccmd_test/builder_test.py", line 564, in test_java_builder__multithreaded_gc
>     "-jar", "%(AUX_JAR)s"])
> AssertionError: Lists differ: ['java', '-server', '-Djava.io... != ['java', '-server', '-Djava.io...
> 
> First differing element 5:
> '-jar'
> '-Xmx4g'
> 
> Second list contains 1 additional elements.
> First extra element 7:
> '%(AUX_JAR)s'
> 
>   ['java',
>    '-server',
>    '-Djava.io.tmpdir=/disk/tmp',
>    '-Djava.awt.headless=true',
>    '-XX:ParallelGCThreads=3',
> +  '-Xmx4g',
>    '-jar',
>    '%(AUX_JAR)s']
> 
> ----------------------------------------------------------------------
> Ran 1636 tests in 3.695s
> 
> FAILED (failures=3)
> E: pybuild pybuild:336: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython2_2.7/build; python2.7 -m nose --exclude='(test_requirementobj__version__command_not_executable)'
> dh_auto_test: pybuild --test --test-nose -i python{version} -p 2.7 returned exit code 13

The full build log is available from:
   http://aws-logs.debian.net/2018/05/02/paleomix_1.2.12-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.