[Debian-med-packaging] Bug#897547: seqan2: FTBFS: dh_auto_test: cd obj-x86_64-linux-gnu && make -j8 -Oline test ARGS\+=-j8 returned exit code 2
Lucas Nussbaum
lucas at debian.org
Wed May 2 21:54:25 BST 2018
Source: seqan2
Version: 2.4.0+dfsg-8
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20180502 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<BUILDDIR>>/seqan2-2.4.0+dfsg/obj-x86_64-linux-gnu'
> /usr/bin/ctest --force-new-ctest-process -j8
> Test project /<<BUILDDIR>>/seqan2-2.4.0+dfsg/obj-x86_64-linux-gnu
> Start 1: test_test_align
> Start 2: test_test_align_simd_global_equal_length
> Start 3: test_test_align_simd_global_equal_length_sse4_host
> Start 4: test_test_align_simd_global_equal_length_avx2_host
> Start 5: test_test_align_simd_global_variable_length
> Start 6: test_test_align_simd_global_variable_length_sse4_host
> Start 7: test_test_align_simd_global_variable_length_avx2_host
> Start 8: test_test_align_simd_local_equal_length
> 1/417 Test #1: test_test_align ................................................................... Passed 0.03 sec
> Start 9: test_test_align_simd_local_equal_length_sse4_host
> 2/417 Test #3: test_test_align_simd_global_equal_length_sse4_host ................................ Passed 0.06 sec
> Start 10: test_test_align_simd_local_equal_length_avx2_host
> 3/417 Test #8: test_test_align_simd_local_equal_length ........................................... Passed 0.04 sec
> Start 11: test_test_align_simd_local_variable_length
> 4/417 Test #9: test_test_align_simd_local_equal_length_sse4_host ................................. Passed 0.04 sec
> Start 12: test_test_align_simd_local_variable_length_sse4_host
> 5/417 Test #4: test_test_align_simd_global_equal_length_avx2_host ................................ Passed 0.07 sec
> Start 13: test_test_align_simd_local_variable_length_avx2_host
> 6/417 Test #5: test_test_align_simd_global_variable_length ....................................... Passed 0.07 sec
> Start 14: test_test_align_extend
> 7/417 Test #2: test_test_align_simd_global_equal_length .......................................... Passed 0.08 sec
> Start 15: test_align_parallel_data_structures
> 8/417 Test #6: test_test_align_simd_global_variable_length_sse4_host ............................. Passed 0.08 sec
> Start 16: test_test_align_parallel_interface
> 9/417 Test #10: test_test_align_simd_local_equal_length_avx2_host ................................. Passed 0.03 sec
> Start 17: test_test_align_parallel_interface_sse4_host
> 10/417 Test #14: test_test_align_extend ............................................................ Passed 0.01 sec
> Start 18: test_test_align_parallel_interface_avx2_host
> 11/417 Test #7: test_test_align_simd_global_variable_length_avx2_host ............................. Passed 0.07 sec
> Start 19: test_test_align_parallel_algorithm
> 12/417 Test #11: test_test_align_simd_local_variable_length ........................................ Passed 0.03 sec
> Start 20: test_test_align_parallel_algorithm_sse4_host
> 13/417 Test #12: test_test_align_simd_local_variable_length_sse4_host .............................. Passed 0.03 sec
> Start 21: test_test_align_parallel_algorithm_avx2_host
> 14/417 Test #13: test_test_align_simd_local_variable_length_avx2_host .............................. Passed 0.03 sec
> Start 22: test_test_align_profile
> 15/417 Test #22: test_test_align_profile ........................................................... Passed 0.02 sec
> Start 23: test_test_align_split
> 16/417 Test #23: test_test_align_split ............................................................. Passed 0.02 sec
> Start 24: test_test_alignment_free
> 17/417 Test #15: test_align_parallel_data_structures ............................................... Passed 0.16 sec
> Start 25: test_test_arg_parse
> 18/417 Test #25: test_test_arg_parse ............................................................... Passed 0.02 sec
> Start 26: test_test_arg_parse_version_check
> 19/417 Test #26: test_test_arg_parse_version_check ................................................. Passed 0.03 sec
> Start 27: test_test_bam_io
> 20/417 Test #16: test_test_align_parallel_interface ................................................ Passed 0.29 sec
> Start 28: test_test_basic_exception
> 21/417 Test #28: test_test_basic_exception ......................................................... Passed 0.02 sec
> Start 29: test_test_basic_metaprogramming
> 22/417 Test #29: test_test_basic_metaprogramming ................................................... Passed 0.02 sec
> Start 30: test_test_basic_fundamental
> 23/417 Test #30: test_test_basic_fundamental ....................................................... Passed 0.01 sec
> Start 31: test_test_basic_concept
> 24/417 Test #31: test_test_basic_concept ........................................................... Passed 0.00 sec
> Start 32: test_test_basic_alphabet
> 25/417 Test #32: test_test_basic_alphabet .......................................................... Passed 0.01 sec
> Start 33: test_test_basic_aggregate
> 26/417 Test #33: test_test_basic_aggregate ......................................................... Passed 0.01 sec
> Start 34: test_test_basic_allocator
> 27/417 Test #34: test_test_basic_allocator ......................................................... Passed 0.01 sec
> Start 35: test_test_basic_parallelism
> 28/417 Test #35: test_test_basic_parallelism ....................................................... Passed 0.01 sec
> Start 36: test_test_basic_math
> 29/417 Test #36: test_test_basic_math .............................................................. Passed 0.01 sec
> Start 37: test_test_basic_smart_pointer
> 30/417 Test #37: test_test_basic_smart_pointer ..................................................... Passed 0.00 sec
> Start 38: test_test_basic_container
> 31/417 Test #38: test_test_basic_container ......................................................... Passed 0.01 sec
> Start 39: test_test_basic_proxy
> 32/417 Test #19: test_test_align_parallel_algorithm ................................................ Passed 0.42 sec
> Start 40: test_test_basic_iterator
> 33/417 Test #39: test_test_basic_proxy ............................................................. Passed 0.03 sec
> Start 41: test_test_bed_io
> 34/417 Test #40: test_test_basic_iterator .......................................................... Passed 0.01 sec
> Start 42: test_blast
> 35/417 Test #41: test_test_bed_io .................................................................. Passed 0.01 sec
> Start 43: test_test_consensus
> 36/417 Test #43: test_test_consensus ............................................................... Passed 0.02 sec
> Start 44: test_test_consensus_v2
> 37/417 Test #42: test_blast ........................................................................ Passed 0.04 sec
> Start 45: test_test_find
> 38/417 Test #18: test_test_align_parallel_interface_avx2_host ...................................... Passed 0.62 sec
> Start 46: test_test_gff_io
> 39/417 Test #46: test_test_gff_io .................................................................. Passed 0.03 sec
> Start 47: test_test_graph_algorithms
> 40/417 Test #47: test_test_graph_algorithms ........................................................ Passed 0.01 sec
> Start 48: test_test_graph_align
> 41/417 Test #48: test_test_graph_align ............................................................. Passed 0.01 sec
> Start 49: test_test_graph_msa
> 42/417 Test #17: test_test_align_parallel_interface_sse4_host ...................................... Passed 0.74 sec
> Start 50: test_test_graph_types_property_map
> 43/417 Test #50: test_test_graph_types_property_map ................................................ Passed 0.01 sec
> Start 51: test_test_graph_types_derived
> 44/417 Test #51: test_test_graph_types_derived ..................................................... Passed 0.01 sec
> Start 52: test_test_graph_types_iterators
> 45/417 Test #52: test_test_graph_types_iterators ................................................... Passed 0.01 sec
> Start 53: test_test_graph_types_types
> 46/417 Test #53: test_test_graph_types_types ....................................................... Passed 0.00 sec
> Start 54: test_test_graph_types_utils
> 47/417 Test #54: test_test_graph_types_utils ....................................................... Passed 0.00 sec
> Start 55: test_test_index_creation
> 48/417 Test #44: test_test_consensus_v2 ............................................................ Passed 0.33 sec
> Start 56: test_test_index_crosscompare_char
> 49/417 Test #56: test_test_index_crosscompare_char ................................................. Passed 0.03 sec
> Start 57: test_test_index_crosscompare_char_dfi
> 50/417 Test #57: test_test_index_crosscompare_char_dfi ............................................. Passed 0.02 sec
> Start 58: test_test_index_crosscompare_dna
> 51/417 Test #20: test_test_align_parallel_algorithm_sse4_host ...................................... Passed 0.86 sec
> Start 59: test_test_index_crosscompare_dna_dfi
> 52/417 Test #58: test_test_index_crosscompare_dna .................................................. Passed 0.04 sec
> Start 60: test_test_index_qgram
> 53/417 Test #59: test_test_index_crosscompare_dna_dfi .............................................. Passed 0.02 sec
> Start 61: test_test_index_sa_bwtwalk
> 54/417 Test #60: test_test_index_qgram ............................................................. Passed 0.01 sec
> Start 62: test_test_index_shapes
> 55/417 Test #62: test_test_index_shapes ............................................................ Passed 0.01 sec
> Start 63: test_test_index_drawing
> 56/417 Test #63: test_test_index_drawing ........................................................... Passed 0.01 sec
> Start 64: test_test_index_fm_rank_dictionary
> 57/417 Test #45: test_test_find .................................................................... Passed 0.47 sec
> Start 65: test_test_index_fm_sparse_string
> 58/417 Test #55: test_test_index_creation .......................................................... Passed 0.19 sec
> Start 66: test_test_index_base
> 59/417 Test #65: test_test_index_fm_sparse_string .................................................. Passed 0.02 sec
> Start 67: test_test_index_fm
> 60/417 Test #61: test_test_index_sa_bwtwalk ........................................................ Passed 0.09 sec
> Start 68: test_test_index_bifm
> 61/417 Test #21: test_test_align_parallel_algorithm_avx2_host ...................................... Passed 0.98 sec
> Start 69: test_test_index_vstree
> 62/417 Test #49: test_test_graph_msa ............................................................... Passed 0.37 sec
> Start 70: test_test_index_stree_iterators
> 63/417 Test #70: test_test_index_stree_iterators ................................................... Passed 0.06 sec
> Start 71: test_test_index_view
> 64/417 Test #71: test_test_index_view .............................................................. Passed 0.03 sec
> Start 72: test_test_index_finder
> 65/417 Test #24: test_test_alignment_free .......................................................... Passed 1.39 sec
> Start 73: test_test_find_backtracking
> 66/417 Test #73: test_test_find_backtracking ....................................................... Passed 0.03 sec
> Start 74: test_test_index_repeats
> 67/417 Test #74: test_test_index_repeats ........................................................... Passed 0.33 sec
> Start 75: test_test_journaled_set
> 68/417 Test #75: test_test_journaled_set ........................................................... Passed 0.04 sec
> Start 76: test_test_journaled_string_tree
> 69/417 Test #76: test_test_journaled_string_tree ................................................... Passed 0.01 sec
> Start 77: test_test_delta_map
> 70/417 Test #77: test_test_delta_map ............................................................... Passed 0.01 sec
> Start 78: test_journaled_string_tree_traverser
> 71/417 Test #64: test_test_index_fm_rank_dictionary ................................................ Passed 1.13 sec
> Start 79: test_journaled_string_tree_find
> 72/417 Test #78: test_journaled_string_tree_traverser .............................................. Passed 0.28 sec
> Start 80: test_test_map
> 73/417 Test #72: test_test_index_finder ............................................................ Passed 1.38 sec
> Start 81: test_test_misc
> 74/417 Test #81: test_test_misc .................................................................... Passed 0.03 sec
> Start 82: test_test_modifier
> 75/417 Test #82: test_test_modifier ................................................................ Passed 0.08 sec
> Start 83: test_test_modifier_cyclic_shape
> 76/417 Test #83: test_test_modifier_cyclic_shape ................................................... Passed 0.02 sec
> Start 84: test_test_multiple_translation_units
> 77/417 Test #84: test_test_multiple_translation_units .............................................. Passed 0.00 sec
> Start 85: test_test_parallel
> 78/417 Test #69: test_test_index_vstree ............................................................ Passed 2.61 sec
> Start 86: test_test_parse_lm
> 79/417 Test #86: test_test_parse_lm ................................................................ Passed 0.02 sec
> Start 87: test_test_pipe
> 80/417 Test #80: test_test_map ..................................................................... Passed 1.74 sec
> Start 88: test_test_platform
> 81/417 Test #88: test_test_platform ................................................................ Passed 0.02 sec
> Start 89: test_test_random
> 82/417 Test #89: test_test_random .................................................................. Passed 0.03 sec
> Start 90: test_test_realign
> 83/417 Test #90: test_test_realign ................................................................. Passed 0.34 sec
> Start 91: test_reduced_aminoacid
> 84/417 Test #91: test_reduced_aminoacid ............................................................ Passed 0.03 sec
> Start 92: test_test_rna_io
> 85/417 Test #92: test_test_rna_io .................................................................. Passed 0.02 sec
> Start 93: test_test_roi_io
> 86/417 Test #93: test_test_roi_io .................................................................. Passed 0.00 sec
> Start 94: test_test_score
> 87/417 Test #94: test_test_score ................................................................... Passed 0.01 sec
> Start 95: test_test_seeds_combination
> 88/417 Test #95: test_test_seeds_combination ....................................................... Passed 0.02 sec
> Start 96: test_test_seeds_extension
> 89/417 Test #96: test_test_seeds_extension ......................................................... Passed 0.02 sec
> Start 97: test_test_seeds_global_chaining
> 90/417 Test #97: test_test_seeds_global_chaining ................................................... Passed 0.00 sec
> Start 98: test_test_seeds_seed_base
> 91/417 Test #98: test_test_seeds_seed_base ......................................................... Passed 0.00 sec
> Start 99: test_test_seeds_seed_chained
> 92/417 Test #99: test_test_seeds_seed_chained ...................................................... Passed 0.00 sec
> Start 100: test_test_seeds_seed_diagonal
> 93/417 Test #100: test_test_seeds_seed_diagonal ..................................................... Passed 0.00 sec
> Start 101: test_test_seeds_seed_set_base
> 94/417 Test #66: test_test_index_base .............................................................. Passed 3.46 sec
> Start 102: test_test_seeds_seed_set_unordered
> 95/417 Test #101: test_test_seeds_seed_set_base ..................................................... Passed 0.02 sec
> Start 103: test_test_seeds_align_banded_chain_impl
> 96/417 Test #102: test_test_seeds_seed_set_unordered ................................................ Passed 0.04 sec
> Start 104: test_test_seeds_banded_chain_alignment_interface
> 97/417 Test #103: test_test_seeds_align_banded_chain_impl ........................................... Passed 0.06 sec
> Start 105: test_test_seq_io
> 98/417 Test #104: test_test_seeds_banded_chain_alignment_interface .................................. Passed 0.06 sec
> Start 106: test_test_sequence
> 99/417 Test #106: test_test_sequence ................................................................ Passed 0.03 sec
> Start 107: test_test_sequence_v2
> 100/417 Test #105: test_test_seq_io .................................................................. Passed 0.14 sec
> Start 108: test_test_stringset_v2
> 101/417 Test #108: test_test_stringset_v2 ............................................................ Passed 0.06 sec
> Start 109: test_test_sequence_journaled
> 102/417 Test #109: test_test_sequence_journaled ...................................................... Passed 0.02 sec
> Start 110: test_test_simd_vector
> 103/417 Test #110: test_test_simd_vector ............................................................. Passed 0.02 sec
> Start 111: test_test_simd_vector_sse4_host
> 104/417 Test #87: test_test_pipe .................................................................... Passed 1.12 sec
> Start 112: test_test_simd_vector_avx2_host
> 105/417 Test #111: test_test_simd_vector_sse4_host ................................................... Passed 0.03 sec
> Start 113: test_test_simple_intervals_io
> 106/417 Test #112: test_test_simd_vector_avx2_host ................................................... Passed 0.02 sec
> Start 114: test_test_statistics
> 107/417 Test #113: test_test_simple_intervals_io ..................................................... Passed 0.03 sec
> Start 115: test_test_store
> 108/417 Test #114: test_test_statistics .............................................................. Passed 0.04 sec
> Start 116: test_test_stream
> 109/417 Test #107: test_test_sequence_v2 ............................................................. Passed 0.58 sec
> Start 117: test_test_find_swift
> 110/417 Test #117: test_test_find_swift .............................................................. Passed 0.03 sec
> Start 118: test_test_tabix_io
> 111/417 Test #118: test_test_tabix_io ................................................................ Passed 0.20 sec
> Start 119: test_translation
> 112/417 Test #115: test_test_store ................................................................... Passed 0.70 sec
> Start 120: test_ucsc_io
> 113/417 Test #120: test_ucsc_io ...................................................................... Passed 0.02 sec
> Start 121: test_test_vcf_io
> 114/417 Test #121: test_test_vcf_io .................................................................. Passed 0.01 sec
> Start 122: test_demo_dox_align_align
> 115/417 Test #122: test_demo_dox_align_align ......................................................... Passed 0.10 sec
> Start 123: test_demo_dox_align_compute_alignment_stats
> 116/417 Test #123: test_demo_dox_align_compute_alignment_stats ....................................... Passed 0.11 sec
> Start 124: test_demo_dox_align_gaps_example
> 117/417 Test #124: test_demo_dox_align_gaps_example .................................................. Passed 0.04 sec
> Start 125: test_demo_dox_align_global_alignment_banded
> 118/417 Test #125: test_demo_dox_align_global_alignment_banded ....................................... Passed 0.12 sec
> Start 126: test_demo_dox_align_global_alignment_unbanded
> 119/417 Test #126: test_demo_dox_align_global_alignment_unbanded ..................................... Passed 0.07 sec
> Start 127: test_demo_dox_align_integrate_align
> 120/417 Test #119: test_translation .................................................................. Passed 0.71 sec
> Start 128: test_demo_dox_align_extend_extend_alignment
> 121/417 Test #127: test_demo_dox_align_integrate_align ............................................... Passed 0.11 sec
> Start 129: test_demo_dox_align_split_split_alignment
> 122/417 Test #128: test_demo_dox_align_extend_extend_alignment ....................................... Passed 0.07 sec
> Start 130: test_demo_dox_bam_io_bam_tags_dict
> 123/417 Test #130: test_demo_dox_bam_io_bam_tags_dict ................................................ Passed 0.06 sec
> Start 131: test_demo_dox_basic_zip_iterator
> 124/417 Test #129: test_demo_dox_align_split_split_alignment ......................................... Passed 0.14 sec
> Start 132: test_demo_dox_consensus_consensus_alignment
> 125/417 Test #131: test_demo_dox_basic_zip_iterator .................................................. Passed 0.08 sec
> Start 133: test_demo_dox_find_finder_index
> 126/417 Test #132: test_demo_dox_consensus_consensus_alignment ....................................... Passed 0.11 sec
> Start 134: test_demo_dox_find_finder_online
> 127/417 Test #133: test_demo_dox_find_finder_index ................................................... Passed 0.09 sec
> Start 135: test_demo_dox_graph_algorithms_all_pairs_shortest_path
> 128/417 Test #67: test_test_index_fm ................................................................ Passed 5.46 sec
> Start 136: test_demo_dox_graph_algorithms_bellman_ford_algorithm
> 129/417 Test #134: test_demo_dox_find_finder_online .................................................. Passed 0.08 sec
> Start 137: test_demo_dox_graph_algorithms_breadth_first_search
> 130/417 Test #135: test_demo_dox_graph_algorithms_all_pairs_shortest_path ............................ Passed 0.08 sec
> Start 138: test_demo_dox_graph_algorithms_dag_shortest_path
> 131/417 Test #136: test_demo_dox_graph_algorithms_bellman_ford_algorithm ............................. Passed 0.06 sec
> Start 139: test_demo_dox_graph_algorithms_depth_first_search
> 132/417 Test #137: test_demo_dox_graph_algorithms_breadth_first_search ............................... Passed 0.05 sec
> Start 140: test_demo_dox_graph_algorithms_dijkstra
> 133/417 Test #138: test_demo_dox_graph_algorithms_dag_shortest_path .................................. Passed 0.13 sec
> Start 141: test_demo_dox_graph_algorithms_floyd_warshall_algorithm
> 134/417 Test #140: test_demo_dox_graph_algorithms_dijkstra ........................................... Passed 0.10 sec
> Start 142: test_demo_dox_graph_algorithms_ford_fulkerson_algorithm
> 135/417 Test #139: test_demo_dox_graph_algorithms_depth_first_search ................................. Passed 0.16 sec
> Start 143: test_demo_dox_graph_algorithms_kruskals_algorithm
> 136/417 Test #141: test_demo_dox_graph_algorithms_floyd_warshall_algorithm ........................... Passed 0.11 sec
> Start 144: test_demo_dox_graph_algorithms_prims_algorithm
> 137/417 Test #142: test_demo_dox_graph_algorithms_ford_fulkerson_algorithm ........................... Passed 0.14 sec
> Start 145: test_demo_dox_graph_algorithms_strongly_connected_components
> 138/417 Test #143: test_demo_dox_graph_algorithms_kruskals_algorithm ................................. Passed 0.10 sec
> Start 146: test_demo_dox_graph_algorithms_topological_sort
> 139/417 Test #144: test_demo_dox_graph_algorithms_prims_algorithm .................................... Passed 0.07 sec
> Start 147: test_demo_dox_graph_algorithms_transitive_closure
> 140/417 Test #146: test_demo_dox_graph_algorithms_topological_sort ................................... Passed 0.05 sec
> Start 148: test_demo_dox_graph_types_graph_algo_dijkstra
> 141/417 Test #145: test_demo_dox_graph_algorithms_strongly_connected_components ...................... Passed 0.09 sec
> Start 149: test_demo_dox_index_begin_atEnd_representative
> 142/417 Test #147: test_demo_dox_graph_algorithms_transitive_closure ................................. Passed 0.07 sec
> Start 150: test_demo_dox_index_counting
> 143/417 Test #148: test_demo_dox_graph_types_graph_algo_dijkstra ..................................... Passed 0.06 sec
> Start 151: test_demo_dox_index_finder
> 144/417 Test #149: test_demo_dox_index_begin_atEnd_representative .................................... Passed 0.04 sec
> Start 152: test_demo_dox_index_getOccurrences_getFrequency_range_getFibre
> 145/417 Test #150: test_demo_dox_index_counting ...................................................... Passed 0.06 sec
> Start 153: test_demo_dox_index_iterator
> 146/417 Test #152: test_demo_dox_index_getOccurrences_getFrequency_range_getFibre .................... Passed 0.06 sec
> Start 154: test_demo_dox_index_iterator_short
> 147/417 Test #151: test_demo_dox_index_finder ........................................................ Passed 0.08 sec
> Start 155: test_demo_dox_index_length_countSequences
> 148/417 Test #153: test_demo_dox_index_iterator ...................................................... Passed 0.07 sec
> Start 156: test_demo_dox_index_mummy
> 149/417 Test #154: test_demo_dox_index_iterator_short ................................................ Passed 0.05 sec
> Start 157: test_demo_dox_index_open_save
> 150/417 Test #156: test_demo_dox_index_mummy ......................................................... Passed 0.05 sec
> Start 158: test_demo_dox_index_sufarray
> 151/417 Test #155: test_demo_dox_index_length_countSequences ......................................... Passed 0.08 sec
> Start 159: test_demo_dox_index_textAt_indexText_saAt_indexRequire
> 152/417 Test #157: test_demo_dox_index_open_save ..................................................... Passed 0.06 sec
> Start 160: test_demo_dox_misc_enumerate_strings
> 153/417 Test #158: test_demo_dox_index_sufarray ...................................................... Passed 0.06 sec
> Start 161: test_demo_dox_misc_name_store_cache
> 154/417 Test #159: test_demo_dox_index_textAt_indexText_saAt_indexRequire ............................ Passed 0.06 sec
> Start 162: test_demo_dox_modifier_cyclic_shape
> 155/417 Test #160: test_demo_dox_misc_enumerate_strings .............................................. Passed 0.05 sec
> Start 163: test_demo_dox_modifier_modified_string
> 156/417 Test #161: test_demo_dox_misc_name_store_cache ............................................... Passed 0.06 sec
> Start 164: test_demo_dox_modifier_modified_string_mod_view
> 157/417 Test #163: test_demo_dox_modifier_modified_string ............................................ Passed 0.05 sec
> Start 165: test_demo_dox_modifier_modified_string_nested
> 158/417 Test #85: test_test_parallel ................................................................ Passed 4.50 sec
> Start 166: test_demo_dox_parallel_queue_example
> 159/417 Test #116: test_test_stream .................................................................. Passed 2.38 sec
> Start 167: test_demo_dox_parallel_splitter_example
> 160/417 Test #164: test_demo_dox_modifier_modified_string_mod_view ................................... Passed 0.08 sec
> Start 168: test_demo_dox_score_score
> 161/417 Test #162: test_demo_dox_modifier_cyclic_shape ............................................... Passed 0.13 sec
> Start 169: test_demo_dox_seeds_seeds_chaining
> 162/417 Test #165: test_demo_dox_modifier_modified_string_nested ..................................... Passed 0.11 sec
> Start 170: test_demo_dox_seeds_seeds_extension
> 163/417 Test #166: test_demo_dox_parallel_queue_example .............................................. Passed 0.08 sec
> Start 171: test_demo_dox_seq_io_fai_index_example
> 164/417 Test #167: test_demo_dox_parallel_splitter_example ........................................... Passed 0.09 sec
> Start 172: test_demo_dox_sequence_container_view_zip
> 165/417 Test #169: test_demo_dox_seeds_seeds_chaining ................................................ Passed 0.08 sec
> Start 173: test_demo_dox_sequence_string2
> 166/417 Test #172: test_demo_dox_sequence_container_view_zip ......................................... Passed 0.05 sec
> Start 174: test_demo_dox_sequence_stringset
> 167/417 Test #171: test_demo_dox_seq_io_fai_index_example ............................................ Passed 0.09 sec
> Start 175: test_demo_dox_stream_lexical_cast
> 168/417 Test #168: test_demo_dox_score_score ......................................................... Passed 0.16 sec
> Start 176: test_demo_howto_align_gaps_clipping
> 169/417 Test #170: test_demo_dox_seeds_seeds_extension ............................................... Passed 0.15 sec
> Start 177: test_demo_howto_custom_file_endings
> 170/417 Test #173: test_demo_dox_sequence_string2 .................................................... Passed 0.09 sec
> Start 178: test_demo_howto_filter_similar_sequences
> 171/417 Test #174: test_demo_dox_sequence_stringset .................................................. Passed 0.08 sec
> Start 179: test_demo_howto_scores_init_score
> 172/417 Test #175: test_demo_dox_stream_lexical_cast ................................................. Passed 0.09 sec
> Start 180: test_demo_howto_scores_load_score
> 173/417 Test #176: test_demo_howto_align_gaps_clipping ............................................... Passed 0.08 sec
> Start 181: test_demo_tutorial_a_first_example_basic_code
> 174/417 Test #177: test_demo_howto_custom_file_endings ............................................... Passed 0.07 sec
> Start 182: test_demo_tutorial_a_first_example_basic_code_detailed
> 175/417 Test #178: test_demo_howto_filter_similar_sequences .......................................... Passed 0.08 sec
> Start 183: test_demo_tutorial_a_first_example_code_encapsulation
> 176/417 Test #179: test_demo_howto_scores_init_score ................................................. Passed 0.08 sec
> Start 184: test_demo_tutorial_a_first_example_final_result
> 177/417 Test #181: test_demo_tutorial_a_first_example_basic_code ..................................... Passed 0.06 sec
> Start 185: test_demo_tutorial_a_first_example_solution_1
> 178/417 Test #180: test_demo_howto_scores_load_score ................................................. Passed 0.08 sec
> Start 186: test_demo_tutorial_a_first_example_solution_2
> 179/417 Test #182: test_demo_tutorial_a_first_example_basic_code_detailed ............................ Passed 0.07 sec
> Start 187: test_demo_tutorial_a_first_example_solution_3
> 180/417 Test #183: test_demo_tutorial_a_first_example_code_encapsulation ............................. Passed 0.08 sec
> Start 188: test_demo_tutorial_a_first_example_solution_4
> 181/417 Test #184: test_demo_tutorial_a_first_example_final_result ................................... Passed 0.07 sec
> Start 189: test_demo_tutorial_a_first_example_solution_5
> 182/417 Test #186: test_demo_tutorial_a_first_example_solution_2 ..................................... Passed 0.08 sec
> Start 190: test_demo_tutorial_a_first_example_solution_6
> 183/417 Test #187: test_demo_tutorial_a_first_example_solution_3 ..................................... Passed 0.08 sec
> Start 191: test_demo_tutorial_alignment_align
> 184/417 Test #188: test_demo_tutorial_a_first_example_solution_4 ..................................... Passed 0.06 sec
> Start 192: test_demo_tutorial_alignment_align_assignment1
> 185/417 Test #189: test_demo_tutorial_a_first_example_solution_5 ..................................... Passed 0.07 sec
> Start 193: test_demo_tutorial_alignment_graph
> 186/417 Test #185: test_demo_tutorial_a_first_example_solution_1 ..................................... Passed 0.16 sec
> Start 194: test_demo_tutorial_alignment_graph_assignment1
> 187/417 Test #190: test_demo_tutorial_a_first_example_solution_6 ..................................... Passed 0.09 sec
> Start 195: test_demo_tutorial_alignment_scoring_scheme_affine_dgs
> 188/417 Test #191: test_demo_tutorial_alignment_align ................................................ Passed 0.10 sec
> Start 196: test_demo_tutorial_alignment_scoring_scheme_matrix
> 189/417 Test #192: test_demo_tutorial_alignment_align_assignment1 .................................... Passed 0.11 sec
> Start 197: test_demo_tutorial_alignment_scoring_scheme_simple
> 190/417 Test #194: test_demo_tutorial_alignment_graph_assignment1 .................................... Passed 0.07 sec
> Start 198: test_demo_tutorial_alphabets_assignment_1
> 191/417 Test #193: test_demo_tutorial_alignment_graph ................................................ Passed 0.10 sec
> Start 199: test_demo_tutorial_alphabets_assignment_1_solution
> 192/417 Test #195: test_demo_tutorial_alignment_scoring_scheme_affine_dgs ............................ Passed 0.07 sec
> Start 200: test_demo_tutorial_alphabets_example_bitsPerValue
> 193/417 Test #196: test_demo_tutorial_alignment_scoring_scheme_matrix ................................ Passed 0.06 sec
> Start 201: test_demo_tutorial_alphabets_example_ordValue
> 194/417 Test #198: test_demo_tutorial_alphabets_assignment_1 ......................................... Passed 0.06 sec
> Start 202: test_demo_tutorial_alphabets_example_size
> 195/417 Test #197: test_demo_tutorial_alignment_scoring_scheme_simple ................................ Passed 0.08 sec
> Start 203: test_demo_tutorial_background_and_motivation_example
> 196/417 Test #200: test_demo_tutorial_alphabets_example_bitsPerValue ................................. Passed 0.07 sec
> Start 204: test_demo_tutorial_basic_techniques_base
> 197/417 Test #201: test_demo_tutorial_alphabets_example_ordValue ..................................... Passed 0.07 sec
> Start 205: test_demo_tutorial_basics_allocator
> 198/417 Test #199: test_demo_tutorial_alphabets_assignment_1_solution ................................ Passed 0.12 sec
> Start 206: test_demo_tutorial_basics_base
> 199/417 Test #202: test_demo_tutorial_alphabets_example_size ......................................... Passed 0.07 sec
> Start 207: test_demo_tutorial_basics_show_alphabets
> 200/417 Test #204: test_demo_tutorial_basic_techniques_base .......................................... Passed 0.06 sec
> Start 208: test_demo_tutorial_basics_strings
> 201/417 Test #203: test_demo_tutorial_background_and_motivation_example .............................. Passed 0.11 sec
> Start 209: test_demo_tutorial_bed_io_base
> 202/417 Test #206: test_demo_tutorial_basics_base .................................................... Passed 0.09 sec
> Start 210: test_demo_tutorial_bed_io_example1
> 203/417 Test #208: test_demo_tutorial_basics_strings ................................................. Passed 0.09 sec
> Start 211: test_demo_tutorial_bed_io_solution1
> 204/417 Test #207: test_demo_tutorial_basics_show_alphabets .......................................... Passed 0.11 sec
> Start 212: test_demo_tutorial_bed_io_solution2
> 205/417 Test #210: test_demo_tutorial_bed_io_example1 ................................................ Passed 0.08 sec
> Start 213: test_demo_tutorial_bed_io_solution3
> 206/417 Test #209: test_demo_tutorial_bed_io_base .................................................... Passed 0.12 sec
> Start 214: test_demo_tutorial_blast_io_read_assignment
> 207/417 Test #211: test_demo_tutorial_bed_io_solution1 ............................................... Passed 0.09 sec
> Start 215: test_demo_tutorial_blast_io_write_assignment
> 208/417 Test #212: test_demo_tutorial_bed_io_solution2 ............................................... Passed 0.10 sec
> Start 216: test_demo_tutorial_consensus_alignment_with_positions
> 209/417 Test #214: test_demo_tutorial_blast_io_read_assignment ....................................... Passed 0.07 sec
> Start 217: test_demo_tutorial_consensus_alignment_without_positions
> 210/417 Test #205: test_demo_tutorial_basics_allocator ............................................... Passed 0.29 sec
> Start 218: test_demo_tutorial_file_io_overview_example1
> 211/417 Test #213: test_demo_tutorial_bed_io_solution3 ............................................... Passed 0.11 sec
> Start 219: test_demo_tutorial_file_io_overview_solution1
> 212/417 Test #215: test_demo_tutorial_blast_io_write_assignment ...................................... Passed 0.09 sec
> Start 220: test_demo_tutorial_file_io_overview_solution2
> 213/417 Test #216: test_demo_tutorial_consensus_alignment_with_positions ............................. Passed 0.09 sec
> Start 221: test_demo_tutorial_file_io_overview_solution3
> 214/417 Test #217: test_demo_tutorial_consensus_alignment_without_positions .......................... Passed 0.07 sec
> Start 222: test_demo_tutorial_fragment_store_access_aligned_reads
> 215/417 Test #218: test_demo_tutorial_file_io_overview_example1 ...................................... Passed 0.11 sec
> Start 223: test_demo_tutorial_fragment_store_access_aligned_reads2
> 216/417 Test #220: test_demo_tutorial_file_io_overview_solution2 ..................................... Passed 0.12 sec
> Start 224: test_demo_tutorial_fragment_store_base
> 217/417 Test #221: test_demo_tutorial_file_io_overview_solution3 ..................................... Passed 0.12 sec
> Start 225: test_demo_tutorial_fragment_store_display_aligned_reads
> 218/417 Test #219: test_demo_tutorial_file_io_overview_solution1 ..................................... Passed 0.17 sec
> Start 226: test_demo_tutorial_generic_programming_example_hashing
> 219/417 Test #222: test_demo_tutorial_fragment_store_access_aligned_reads ............................ Passed 0.14 sec
> Start 227: test_demo_tutorial_generic_programming_template_subclassing
> 220/417 Test #224: test_demo_tutorial_fragment_store_base ............................................ Passed 0.10 sec
> Start 228: test_demo_tutorial_genome_annotations_assignment_1_hint
> 221/417 Test #223: test_demo_tutorial_fragment_store_access_aligned_reads2 ........................... Passed 0.16 sec
> Start 229: test_demo_tutorial_genome_annotations_assignment_1_solution
> 222/417 Test #225: test_demo_tutorial_fragment_store_display_aligned_reads ........................... Passed 0.12 sec
> Start 230: test_demo_tutorial_genome_annotations_assignment_2_solution
> 223/417 Test #226: test_demo_tutorial_generic_programming_example_hashing ............................ Passed 0.12 sec
> Start 231: test_demo_tutorial_genome_annotations_assignment_3_solution
> 224/417 Test #227: test_demo_tutorial_generic_programming_template_subclassing ....................... Passed 0.10 sec
> Start 232: test_demo_tutorial_genome_annotations_assignment_4_solution
> 225/417 Test #228: test_demo_tutorial_genome_annotations_assignment_1_hint ........................... Passed 0.07 sec
> Start 233: test_demo_tutorial_genome_annotations_base
> 226/417 Test #230: test_demo_tutorial_genome_annotations_assignment_2_solution ....................... Passed 0.10 sec
> Start 234: test_demo_tutorial_gff_and_gtf_io_base
> 227/417 Test #229: test_demo_tutorial_genome_annotations_assignment_1_solution ....................... Passed 0.12 sec
> Start 235: test_demo_tutorial_gff_and_gtf_io_example1
> 228/417 Test #231: test_demo_tutorial_genome_annotations_assignment_3_solution ....................... Passed 0.11 sec
> Start 236: test_demo_tutorial_gff_and_gtf_io_example2
> 229/417 Test #233: test_demo_tutorial_genome_annotations_base ........................................ Passed 0.11 sec
> Start 237: test_demo_tutorial_gff_and_gtf_io_solution1
> 230/417 Test #232: test_demo_tutorial_genome_annotations_assignment_4_solution ....................... Passed 0.16 sec
> Start 238: test_demo_tutorial_gff_and_gtf_io_solution2
> 231/417 Test #234: test_demo_tutorial_gff_and_gtf_io_base ............................................ Passed 0.07 sec
> Start 239: test_demo_tutorial_gff_and_gtf_io_solution3
> 232/417 Test #236: test_demo_tutorial_gff_and_gtf_io_example2 ........................................ Passed 0.07 sec
> Start 240: test_demo_tutorial_graph_graph_algo_scc
> 233/417 Test #235: test_demo_tutorial_gff_and_gtf_io_example1 ........................................ Passed 0.11 sec
> Start 241: test_demo_tutorial_graph_graph_dijkstra
> 234/417 Test #237: test_demo_tutorial_gff_and_gtf_io_solution1 ....................................... Passed 0.10 sec
> Start 242: test_demo_tutorial_graph_graph_hmm
> 235/417 Test #239: test_demo_tutorial_gff_and_gtf_io_solution3 ....................................... Passed 0.08 sec
> Start 243: test_demo_tutorial_graph_solution_1
> 236/417 Test #238: test_demo_tutorial_gff_and_gtf_io_solution2 ....................................... Passed 0.13 sec
> Start 244: test_demo_tutorial_index_iterators_index_assignment1
> 237/417 Test #240: test_demo_tutorial_graph_graph_algo_scc ........................................... Passed 0.14 sec
> Start 245: test_demo_tutorial_index_iterators_index_assignment2
> 238/417 Test #242: test_demo_tutorial_graph_graph_hmm ................................................ Passed 0.12 sec
> Start 246: test_demo_tutorial_index_iterators_index_bidirectional_search
> 239/417 Test #241: test_demo_tutorial_graph_graph_dijkstra ........................................... Passed 0.15 sec
> Start 247: test_demo_tutorial_index_iterators_index_preorder
> 240/417 Test #243: test_demo_tutorial_graph_solution_1 ............................................... Passed 0.14 sec
> Start 248: test_demo_tutorial_index_iterators_index_property_maps
> 241/417 Test #244: test_demo_tutorial_index_iterators_index_assignment1 .............................. Passed 0.10 sec
> Start 249: test_demo_tutorial_index_iterators_index_search
> 242/417 Test #245: test_demo_tutorial_index_iterators_index_assignment2 .............................. Passed 0.10 sec
> Start 250: test_demo_tutorial_index_iterators_index_search2
> 243/417 Test #246: test_demo_tutorial_index_iterators_index_bidirectional_search ..................... Passed 0.08 sec
> Start 251: test_demo_tutorial_index_iterators_iterator_assignment2
> 244/417 Test #247: test_demo_tutorial_index_iterators_index_preorder ................................. Passed 0.06 sec
> Start 252: test_demo_tutorial_index_iterators_iterator_solution1
> 245/417 Test #251: test_demo_tutorial_index_iterators_iterator_assignment2 ........................... Passed 0.08 sec
> Start 253: test_demo_tutorial_index_iterators_iterator_solution2
> 246/417 Test #252: test_demo_tutorial_index_iterators_iterator_solution1 ............................. Passed 0.06 sec
> Start 254: test_demo_tutorial_index_iterators_iterator_solution3
> 247/417 Test #249: test_demo_tutorial_index_iterators_index_search ................................... Passed 0.11 sec
> Start 255: test_demo_tutorial_indexed_fasta_io_base
> 248/417 Test #250: test_demo_tutorial_index_iterators_index_search2 .................................. Passed 0.12 sec
> Start 256: test_demo_tutorial_indexed_fasta_io_solution1
> 249/417 Test #254: test_demo_tutorial_index_iterators_iterator_solution3 ............................. Passed 0.06 sec
> Start 257: test_demo_tutorial_indexed_fasta_io_solution2
> 250/417 Test #248: test_demo_tutorial_index_iterators_index_property_maps ............................ Passed 0.19 sec
> Start 258: test_demo_tutorial_indices_assignment_1
> 251/417 Test #255: test_demo_tutorial_indexed_fasta_io_base .......................................... Passed 0.06 sec
> Start 259: test_demo_tutorial_indices_assignment_2
> 252/417 Test #253: test_demo_tutorial_index_iterators_iterator_solution2 ............................. Passed 0.09 sec
> Start 260: test_demo_tutorial_indices_base
> 253/417 Test #256: test_demo_tutorial_indexed_fasta_io_solution1 ..................................... Passed 0.09 sec
> Start 261: test_demo_tutorial_iterators_assignment_1
> 254/417 Test #257: test_demo_tutorial_indexed_fasta_io_solution2 ..................................... Passed 0.08 sec
> Start 262: test_demo_tutorial_iterators_assignment_1_solution
> 255/417 Test #259: test_demo_tutorial_indices_assignment_2 ........................................... Passed 0.09 sec
> Start 263: test_demo_tutorial_iterators_assignment_2_solution
> 256/417 Test #258: test_demo_tutorial_indices_assignment_1 ........................................... Passed 0.12 sec
> Start 264: test_demo_tutorial_iterators_assignment_3_workshop
> 257/417 Test #260: test_demo_tutorial_indices_base ................................................... Passed 0.10 sec
> Start 265: test_demo_tutorial_iterators_assignment_3_workshop_solution
> 258/417 Test #262: test_demo_tutorial_iterators_assignment_1_solution ................................ Passed 0.09 sec
> Start 266: test_demo_tutorial_iterators_assignment_4_workshop_solution
> 259/417 Test #263: test_demo_tutorial_iterators_assignment_2_solution ................................ Passed 0.06 sec
> Start 267: test_demo_tutorial_iterators_base
> 260/417 Test #264: test_demo_tutorial_iterators_assignment_3_workshop ................................ Passed 0.06 sec
> Start 268: test_demo_tutorial_iterators_sequence_iterator_demo
> 261/417 Test #261: test_demo_tutorial_iterators_assignment_1 ......................................... Passed 0.13 sec
> Start 269: test_demo_tutorial_journaled_set_base
> 262/417 Test #265: test_demo_tutorial_iterators_assignment_3_workshop_solution ....................... Passed 0.07 sec
> Start 270: test_demo_tutorial_journaled_set_example_join
> 263/417 Test #269: test_demo_tutorial_journaled_set_base ............................................. Passed 0.05 sec
> Start 271: test_demo_tutorial_journaled_set_example_journal_string_basic
> 264/417 Test #266: test_demo_tutorial_iterators_assignment_4_workshop_solution ....................... Passed 0.08 sec
> Start 272: test_demo_tutorial_journaled_set_example_online_search
> 265/417 Test #268: test_demo_tutorial_iterators_sequence_iterator_demo ............................... Passed 0.08 sec
> Start 273: test_demo_tutorial_journaled_set_example_online_search_assignment1_hint
> 266/417 Test #270: test_demo_tutorial_journaled_set_example_join ..................................... Passed 0.06 sec
> Start 274: test_demo_tutorial_journaled_set_solution_online_search_assignment1
> 267/417 Test #271: test_demo_tutorial_journaled_set_example_journal_string_basic ..................... Passed 0.04 sec
> Start 275: test_demo_tutorial_journaled_set_solution_online_search_assignment2
> 268/417 Test #267: test_demo_tutorial_iterators_base ................................................. Passed 0.16 sec
> Start 276: test_demo_tutorial_journaled_set_solution_online_search_assignment3
> 269/417 Test #273: test_demo_tutorial_journaled_set_example_online_search_assignment1_hint ........... Passed 0.08 sec
> Start 277: test_demo_tutorial_journaled_set_solution_online_search_assignment4
> 270/417 Test #272: test_demo_tutorial_journaled_set_example_online_search ............................ Passed 0.32 sec
> Start 278: test_demo_tutorial_journaled_set_solution_online_search_finder
> 271/417 Test #274: test_demo_tutorial_journaled_set_solution_online_search_assignment1 ............... Passed 0.30 sec
> Start 279: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base
> 272/417 Test #276: test_demo_tutorial_journaled_set_solution_online_search_assignment3 ............... Passed 0.36 sec
> Start 280: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1
> 273/417 Test #279: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base ............... Passed 0.13 sec
> Start 281: test_demo_tutorial_metafunctions_assignment1_solution
> 274/417 Test #275: test_demo_tutorial_journaled_set_solution_online_search_assignment2 ............... Passed 0.44 sec
> Start 282: test_demo_tutorial_metafunctions_base
> 275/417 Test #281: test_demo_tutorial_metafunctions_assignment1_solution ............................. Passed 0.11 sec
> Start 283: test_demo_tutorial_modifiers_UNUSED_modcomplementdna
> 276/417 Test #282: test_demo_tutorial_metafunctions_base ............................................. Passed 0.12 sec
> Start 284: test_demo_tutorial_modifiers_assignment1
> 277/417 Test #277: test_demo_tutorial_journaled_set_solution_online_search_assignment4 ............... Passed 0.51 sec
> Start 285: test_demo_tutorial_modifiers_assignment1_solution
> 278/417 Test #278: test_demo_tutorial_journaled_set_solution_online_search_finder ....................***Failed 0.33 sec
> Running /<<BUILDDIR>>/seqan2-2.4.0+dfsg/obj-x86_64-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_finder.
> ERROR: Return code of /<<BUILDDIR>>/seqan2-2.4.0+dfsg/obj-x86_64-linux-gnu/bin/demo_tutorial_journaled_set_solution_online_search_finder was -11.
>
> Start 286: test_demo_tutorial_modifiers_modreverse
> 279/417 Test #280: test_demo_tutorial_journaled_string_tree_journaled_string_tree_base_assignment1 ... Passed 0.21 sec
> Start 287: test_demo_tutorial_modifiers_modview
> 280/417 Test #283: test_demo_tutorial_modifiers_UNUSED_modcomplementdna .............................. Passed 0.12 sec
> Start 288: test_demo_tutorial_modifiers_nested
> 281/417 Test #285: test_demo_tutorial_modifiers_assignment1_solution ................................. Passed 0.09 sec
> Start 289: test_demo_tutorial_multiple_sequence_alignment_assignment1
> 282/417 Test #286: test_demo_tutorial_modifiers_modreverse ........................................... Passed 0.06 sec
> Start 290: test_demo_tutorial_multiple_sequence_alignment_consensus
> 283/417 Test #287: test_demo_tutorial_modifiers_modview .............................................. Passed 0.06 sec
> Start 291: test_demo_tutorial_multiple_sequence_alignment_msa
> 284/417 Test #284: test_demo_tutorial_modifiers_assignment1 .......................................... Passed 0.13 sec
> Start 292: test_demo_tutorial_pairwise_sequence_alignment_alignment_banded
> 285/417 Test #288: test_demo_tutorial_modifiers_nested ............................................... Passed 0.07 sec
> Start 293: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1
> 286/417 Test #292: test_demo_tutorial_pairwise_sequence_alignment_alignment_banded ................... Passed 0.07 sec
> Start 294: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2
> 287/417 Test #291: test_demo_tutorial_multiple_sequence_alignment_msa ................................ Passed 0.09 sec
> Start 295: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3
> 288/417 Test #289: test_demo_tutorial_multiple_sequence_alignment_assignment1 ........................ Passed 0.13 sec
> Start 296: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap
> 289/417 Test #290: test_demo_tutorial_multiple_sequence_alignment_consensus .......................... Passed 0.13 sec
> Start 297: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised
> 290/417 Test #293: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment1 ....... Passed 0.10 sec
> Start 298: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_standard
> 291/417 Test #294: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment2 ....... Passed 0.09 sec
> Start 299: test_demo_tutorial_pairwise_sequence_alignment_alignment_local
> 292/417 Test #296: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_overlap ........... Passed 0.06 sec
> Start 300: test_demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1
> 293/417 Test #295: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_assignment3 ....... Passed 0.10 sec
> Start 301: test_demo_tutorial_pairwise_sequence_alignment_assignment5
> 294/417 Test #297: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_specialised ....... Passed 0.08 sec
> Start 302: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step1
> 295/417 Test #298: test_demo_tutorial_pairwise_sequence_alignment_alignment_global_standard .......... Passed 0.11 sec
> Start 303: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step2
> 296/417 Test #300: test_demo_tutorial_pairwise_sequence_alignment_alignment_local_assignment1 ........ Passed 0.08 sec
> Start 304: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step3
> 297/417 Test #299: test_demo_tutorial_pairwise_sequence_alignment_alignment_local .................... Passed 0.09 sec
> Start 305: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step4
> 298/417 Test #301: test_demo_tutorial_pairwise_sequence_alignment_assignment5 ........................ Passed 0.11 sec
> Start 306: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step5
> 299/417 Test #304: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step3 .................. Passed 0.05 sec
> Start 307: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step6
> 300/417 Test #302: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step1 .................. Passed 0.11 sec
> Start 308: test_demo_tutorial_parsing_command_line_arguments_base
> 301/417 Test #303: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step2 .................. Passed 0.09 sec
> Start 309: test_demo_tutorial_pattern_matching_assignment1
> 302/417 Test #305: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step4 .................. Passed 0.07 sec
> Start 310: test_demo_tutorial_pattern_matching_assignment1_solution
> 303/417 Test #308: test_demo_tutorial_parsing_command_line_arguments_base ............................ Passed 0.06 sec
> Start 311: test_demo_tutorial_pattern_matching_assignment2
> 304/417 Test #307: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step6 .................. Passed 0.07 sec
> Start 312: test_demo_tutorial_pattern_matching_assignment2_solution
> 305/417 Test #306: test_demo_tutorial_pairwise_sequence_alignment_assignment5_step5 .................. Passed 0.11 sec
> Start 313: test_demo_tutorial_pattern_matching_assignment3
> 306/417 Test #309: test_demo_tutorial_pattern_matching_assignment1 ................................... Passed 0.08 sec
> Start 314: test_demo_tutorial_pattern_matching_assignment3_solution
> 307/417 Test #310: test_demo_tutorial_pattern_matching_assignment1_solution .......................... Passed 0.10 sec
> Start 315: test_demo_tutorial_pattern_matching_find_approx
> 308/417 Test #312: test_demo_tutorial_pattern_matching_assignment2_solution .......................... Passed 0.08 sec
> Start 316: test_demo_tutorial_pattern_matching_find_exact
> 309/417 Test #311: test_demo_tutorial_pattern_matching_assignment2 ................................... Passed 0.11 sec
> Start 317: test_demo_tutorial_pattern_matching_find_index
> 310/417 Test #315: test_demo_tutorial_pattern_matching_find_approx ................................... Passed 0.05 sec
> Start 318: test_demo_tutorial_pattern_matching_find_index_multiple
> 311/417 Test #313: test_demo_tutorial_pattern_matching_assignment3 ................................... Passed 0.12 sec
> Start 319: test_demo_tutorial_q_gram_index_index_assignment5
> 312/417 Test #314: test_demo_tutorial_pattern_matching_assignment3_solution .......................... Passed 0.12 sec
> Start 320: test_demo_tutorial_q_gram_index_index_assignment6
> 313/417 Test #316: test_demo_tutorial_pattern_matching_find_exact .................................... Passed 0.12 sec
> Start 321: test_demo_tutorial_q_gram_index_index_qgram
> 314/417 Test #317: test_demo_tutorial_pattern_matching_find_index .................................... Passed 0.11 sec
> Start 322: test_demo_tutorial_q_gram_index_index_qgram_hash
> 315/417 Test #318: test_demo_tutorial_pattern_matching_find_index_multiple ........................... Passed 0.10 sec
> Start 323: test_demo_tutorial_realignment_step1
> 316/417 Test #319: test_demo_tutorial_q_gram_index_index_assignment5 ................................. Passed 0.09 sec
> Start 324: test_demo_tutorial_realignment_step2
> 317/417 Test #321: test_demo_tutorial_q_gram_index_index_qgram ....................................... Passed 0.08 sec
> Start 325: test_demo_tutorial_sam_and_bam_io_base
> 318/417 Test #320: test_demo_tutorial_q_gram_index_index_assignment6 ................................. Passed 0.15 sec
> Start 326: test_demo_tutorial_sam_and_bam_io_example1
> 319/417 Test #322: test_demo_tutorial_q_gram_index_index_qgram_hash .................................. Passed 0.10 sec
> Start 327: test_demo_tutorial_sam_and_bam_io_example2
> 320/417 Test #323: test_demo_tutorial_realignment_step1 .............................................. Passed 0.12 sec
> Start 328: test_demo_tutorial_sam_and_bam_io_example7
> 321/417 Test #325: test_demo_tutorial_sam_and_bam_io_base ............................................ Passed 0.09 sec
> Start 329: test_demo_tutorial_sam_and_bam_io_solution1
> 322/417 Test #326: test_demo_tutorial_sam_and_bam_io_example1 ........................................ Passed 0.09 sec
> Start 330: test_demo_tutorial_sam_and_bam_io_solution2
> 323/417 Test #327: test_demo_tutorial_sam_and_bam_io_example2 ........................................ Passed 0.11 sec
> Start 331: test_demo_tutorial_sam_and_bam_io_solution3
> 324/417 Test #329: test_demo_tutorial_sam_and_bam_io_solution1 ....................................... Passed 0.10 sec
> Start 332: test_demo_tutorial_seed_and_extend_example1
> 325/417 Test #331: test_demo_tutorial_sam_and_bam_io_solution3 ....................................... Passed 0.08 sec
> Start 333: test_demo_tutorial_seed_and_extend_example2
> 326/417 Test #328: test_demo_tutorial_sam_and_bam_io_example7 ........................................ Passed 0.19 sec
> Start 334: test_demo_tutorial_seed_and_extend_example3
> 327/417 Test #330: test_demo_tutorial_sam_and_bam_io_solution2 ....................................... Passed 0.13 sec
> Start 335: test_demo_tutorial_seed_and_extend_example4
> 328/417 Test #332: test_demo_tutorial_seed_and_extend_example1 ....................................... Passed 0.09 sec
> Start 336: test_demo_tutorial_seed_and_extend_example5
> 329/417 Test #333: test_demo_tutorial_seed_and_extend_example2 ....................................... Passed 0.11 sec
> Start 337: test_demo_tutorial_seed_and_extend_example6
> 330/417 Test #334: test_demo_tutorial_seed_and_extend_example3 ....................................... Passed 0.11 sec
> Start 338: test_demo_tutorial_seed_and_extend_example7
> 331/417 Test #336: test_demo_tutorial_seed_and_extend_example5 ....................................... Passed 0.09 sec
> Start 339: test_demo_tutorial_seed_and_extend_solution1
> 332/417 Test #335: test_demo_tutorial_seed_and_extend_example4 ....................................... Passed 0.12 sec
> Start 340: test_demo_tutorial_seed_and_extend_solution2
> 333/417 Test #337: test_demo_tutorial_seed_and_extend_example6 ....................................... Passed 0.07 sec
> Start 341: test_demo_tutorial_seed_and_extend_solution3
> 334/417 Test #338: test_demo_tutorial_seed_and_extend_example7 ....................................... Passed 0.10 sec
> Start 342: test_demo_tutorial_seed_and_extend_solution4
> 335/417 Test #339: test_demo_tutorial_seed_and_extend_solution1 ...................................... Passed 0.12 sec
> Start 343: test_demo_tutorial_seed_and_extend_solution5
> 336/417 Test #341: test_demo_tutorial_seed_and_extend_solution3 ...................................... Passed 0.09 sec
> Start 344: test_demo_tutorial_seed_and_extend_solution6
> 337/417 Test #340: test_demo_tutorial_seed_and_extend_solution2 ...................................... Passed 0.14 sec
> Start 345: test_demo_tutorial_seeds_example1
> 338/417 Test #342: test_demo_tutorial_seed_and_extend_solution4 ...................................... Passed 0.08 sec
> Start 346: test_demo_tutorial_sequence_io_base
> 339/417 Test #343: test_demo_tutorial_seed_and_extend_solution5 ...................................... Passed 0.08 sec
> Start 347: test_demo_tutorial_sequence_io_example1
> 340/417 Test #324: test_demo_tutorial_realignment_step2 .............................................. Passed 0.66 sec
> Start 348: test_demo_tutorial_sequence_io_solution1
> 341/417 Test #344: test_demo_tutorial_seed_and_extend_solution6 ...................................... Passed 0.10 sec
> Start 349: test_demo_tutorial_sequence_io_solution2
> 342/417 Test #345: test_demo_tutorial_seeds_example1 ................................................. Passed 0.10 sec
> Start 350: test_demo_tutorial_sequence_io_solution3
> 343/417 Test #346: test_demo_tutorial_sequence_io_base ............................................... Passed 0.09 sec
> Start 351: test_demo_tutorial_sequence_io_solution4
> 344/417 Test #347: test_demo_tutorial_sequence_io_example1 ........................................... Passed 0.09 sec
> Start 352: test_demo_tutorial_sequences_assignment_1_solution
> 345/417 Test #348: test_demo_tutorial_sequence_io_solution1 .......................................... Passed 0.07 sec
> Start 353: test_demo_tutorial_sequences_assignment_2_solution
> 346/417 Test #349: test_demo_tutorial_sequence_io_solution2 .......................................... Passed 0.08 sec
> Start 354: test_demo_tutorial_sequences_assignment_3_solution
> 347/417 Test #350: test_demo_tutorial_sequence_io_solution3 .......................................... Passed 0.09 sec
> Start 355: test_demo_tutorial_sequences_assignment_4_solution
> 348/417 Test #351: test_demo_tutorial_sequence_io_solution4 .......................................... Passed 0.09 sec
> Start 356: test_demo_tutorial_sequences_assignment_5_solution
> 349/417 Test #353: test_demo_tutorial_sequences_assignment_2_solution ................................ Passed 0.05 sec
> Start 357: test_demo_tutorial_sequences_assignment_6_solution
> 350/417 Test #352: test_demo_tutorial_sequences_assignment_1_solution ................................ Passed 0.10 sec
> Start 358: test_demo_tutorial_sequences_example_comparisons
> 351/417 Test #355: test_demo_tutorial_sequences_assignment_4_solution ................................ Passed 0.08 sec
> Start 359: test_demo_tutorial_sequences_example_conversions_copy
> 352/417 Test #354: test_demo_tutorial_sequences_assignment_3_solution ................................ Passed 0.10 sec
> Start 360: test_demo_tutorial_sequences_example_conversions_move
> 353/417 Test #356: test_demo_tutorial_sequences_assignment_5_solution ................................ Passed 0.08 sec
> Start 361: test_demo_tutorial_sequences_example_functionality1
> 354/417 Test #357: test_demo_tutorial_sequences_assignment_6_solution ................................ Passed 0.08 sec
> Start 362: test_demo_tutorial_sequences_example_functionality2
> 355/417 Test #359: test_demo_tutorial_sequences_example_conversions_copy ............................. Passed 0.05 sec
> Start 363: test_demo_tutorial_sequences_example_segments
> 356/417 Test #360: test_demo_tutorial_sequences_example_conversions_move ............................. Passed 0.07 sec
> Start 364: test_demo_tutorial_sequences_in_depth_assignment_exact_generous_solution
> 357/417 Test #361: test_demo_tutorial_sequences_example_functionality1 ............................... Passed 0.07 sec
> Start 365: test_demo_tutorial_sequences_in_depth_base
> 358/417 Test #362: test_demo_tutorial_sequences_example_functionality2 ............................... Passed 0.08 sec
> Start 366: test_demo_tutorial_sequences_in_depth_example_overflow
> 359/417 Test #358: test_demo_tutorial_sequences_example_comparisons .................................. Passed 0.12 sec
> Start 367: test_demo_tutorial_simple_rna_seq_base
> 360/417 Test #363: test_demo_tutorial_sequences_example_segments ..................................... Passed 0.05 sec
> Start 368: test_demo_tutorial_simple_rna_seq_genequant_assignment1
> 361/417 Test #365: test_demo_tutorial_sequences_in_depth_base ........................................ Passed 0.07 sec
> Start 369: test_demo_tutorial_simple_rna_seq_genequant_assignment2
> 362/417 Test #366: test_demo_tutorial_sequences_in_depth_example_overflow ............................ Passed 0.07 sec
> Start 370: test_demo_tutorial_simple_rna_seq_genequant_assignment3
> 363/417 Test #367: test_demo_tutorial_simple_rna_seq_base ............................................ Passed 0.11 sec
> Start 371: test_demo_tutorial_simple_rna_seq_genequant_assignment4
> 364/417 Test #368: test_demo_tutorial_simple_rna_seq_genequant_assignment1 ........................... Passed 0.12 sec
> Start 372: test_demo_tutorial_simple_rna_seq_genequant_assignment5
> 365/417 Test #369: test_demo_tutorial_simple_rna_seq_genequant_assignment2 ........................... Passed 0.10 sec
> Start 373: test_demo_tutorial_simple_rna_seq_genequant_solution1
> 366/417 Test #370: test_demo_tutorial_simple_rna_seq_genequant_assignment3 ........................... Passed 0.11 sec
> Start 374: test_demo_tutorial_simple_rna_seq_genequant_solution2
> 367/417 Test #371: test_demo_tutorial_simple_rna_seq_genequant_assignment4 ........................... Passed 0.14 sec
> Start 375: test_demo_tutorial_simple_rna_seq_genequant_solution3
> 368/417 Test #373: test_demo_tutorial_simple_rna_seq_genequant_solution1 ............................. Passed 0.12 sec
> Start 376: test_demo_tutorial_simple_rna_seq_genequant_solution4
> 369/417 Test #374: test_demo_tutorial_simple_rna_seq_genequant_solution2 ............................. Passed 0.11 sec
> Start 377: test_demo_tutorial_simple_rna_seq_genequant_solution5
> 370/417 Test #372: test_demo_tutorial_simple_rna_seq_genequant_assignment5 ........................... Passed 0.22 sec
> Start 378: test_demo_tutorial_simple_rna_seq_interval_tree
> 371/417 Test #378: test_demo_tutorial_simple_rna_seq_interval_tree ................................... Passed 0.07 sec
> Start 379: test_demo_tutorial_string_sets_assignment_1_solution
> 372/417 Test #377: test_demo_tutorial_simple_rna_seq_genequant_solution5 ............................. Passed 0.19 sec
> Start 380: test_demo_tutorial_string_sets_assignment_2
> 373/417 Test #375: test_demo_tutorial_simple_rna_seq_genequant_solution3 ............................. Passed 0.24 sec
> Start 381: test_demo_tutorial_string_sets_assignment_2_solution
> 374/417 Test #376: test_demo_tutorial_simple_rna_seq_genequant_solution4 ............................. Passed 0.26 sec
> Start 382: test_demo_tutorial_string_sets_assignment_3_workshop_solution
> 375/417 Test #379: test_demo_tutorial_string_sets_assignment_1_solution .............................. Passed 0.13 sec
> Start 383: test_demo_tutorial_string_sets_assignment_4_workshop_solution
> 376/417 Test #380: test_demo_tutorial_string_sets_assignment_2 ....................................... Passed 0.08 sec
> Start 384: test_demo_tutorial_string_sets_example_functionality
> 377/417 Test #364: test_demo_tutorial_sequences_in_depth_assignment_exact_generous_solution .......... Passed 0.60 sec
> Start 385: test_demo_tutorial_string_sets_example_functionality_2
> 378/417 Test #383: test_demo_tutorial_string_sets_assignment_4_workshop_solution ..................... Passed 0.06 sec
> Start 386: test_demo_tutorial_string_sets_example_iterators
> 379/417 Test #382: test_demo_tutorial_string_sets_assignment_3_workshop_solution ..................... Passed 0.07 sec
> Start 387: test_demo_tutorial_vcf_io_base
> 380/417 Test #381: test_demo_tutorial_string_sets_assignment_2_solution .............................. Passed 0.17 sec
> Start 388: test_demo_tutorial_vcf_io_example1
> 381/417 Test #384: test_demo_tutorial_string_sets_example_functionality .............................. Passed 0.12 sec
> Start 389: test_demo_tutorial_vcf_io_solution1
> 382/417 Test #385: test_demo_tutorial_string_sets_example_functionality_2 ............................ Passed 0.12 sec
> Start 390: test_demo_tutorial_vcf_io_solution2
> 383/417 Test #386: test_demo_tutorial_string_sets_example_iterators .................................. Passed 0.09 sec
> Start 391: test_demo_tutorial_vcf_io_solution3
> 384/417 Test #387: test_demo_tutorial_vcf_io_base .................................................... Passed 0.13 sec
> Start 392: app_test_bs_tools
> 385/417 Test #389: test_demo_tutorial_vcf_io_solution1 ............................................... Passed 0.10 sec
> Start 393: app_test_dfi
> 386/417 Test #388: test_demo_tutorial_vcf_io_example1 ................................................ Passed 0.13 sec
> Start 394: app_test_fiona
> 387/417 Test #391: test_demo_tutorial_vcf_io_solution3 ............................................... Passed 0.06 sec
> Start 395: app_test_gustaf
> 388/417 Test #390: test_demo_tutorial_vcf_io_solution2 ............................................... Passed 0.15 sec
> Start 396: app_test_insegt
> 389/417 Test #396: app_test_insegt ................................................................... Passed 0.14 sec
> Start 397: app_test_mason2
> 390/417 Test #395: app_test_gustaf ................................................................... Passed 0.49 sec
> Start 398: app_test_micro_razers
> 391/417 Test #27: test_test_bam_io .................................................................. Passed 13.19 sec
> Start 399: app_test_ngs_roi
> 392/417 Test #399: app_test_ngs_roi .................................................................. Passed 0.87 sec
> Start 400: app_test_pair_align
> 393/417 Test #400: app_test_pair_align ............................................................... Passed 1.56 sec
> Start 401: test_test_funcs_param_chooser
> 394/417 Test #401: test_test_funcs_param_chooser ..................................................... Passed 0.02 sec
> Start 402: app_test_rabema
> 395/417 Test #397: app_test_mason2 ................................................................... Passed 4.28 sec
> Start 403: app_test_razers
> 396/417 Test #68: test_test_index_bifm .............................................................. Passed 20.76 sec
> Start 404: app_test_razers3
> 397/417 Test #404: app_test_razers3 .................................................................. Passed 8.70 sec
> Start 405: app_test_razers3_sequential
> 398/417 Test #405: app_test_razers3_sequential ....................................................... Passed 10.64 sec
> Start 406: app_test_sak
> 399/417 Test #406: app_test_sak ...................................................................... Passed 0.31 sec
> Start 407: app_test_sam2matrix
> 400/417 Test #407: app_test_sam2matrix ............................................................... Passed 0.13 sec
> Start 408: app_test_samcat
> 401/417 Test #408: app_test_samcat ................................................................... Passed 0.36 sec
> Start 409: app_test_searchjoin
> 402/417 Test #392: app_test_bs_tools ................................................................. Passed 33.26 sec
> Start 410: app_test_seqan_tcoffee
> 403/417 Test #398: app_test_micro_razers ............................................................. Passed 33.13 sec
> Start 411: app_test_seqcons2
> 404/417 Test #411: app_test_seqcons2 ................................................................. Passed 2.17 sec
> Start 412: app_test_sgip
> 405/417 Test #410: app_test_seqan_tcoffee ............................................................ Passed 4.92 sec
> Start 413: app_test_snp_store
> 406/417 Test #412: app_test_sgip ..................................................................... Passed 3.72 sec
> Start 414: app_test_splazers
> 407/417 Test #409: app_test_searchjoin ............................................................... Passed 23.93 sec
> Start 415: app_test_stellar
> 408/417 Test #414: app_test_splazers ................................................................. Passed 19.37 sec
> Start 416: app_test_tree_recon
> 409/417 Test #416: app_test_tree_recon ............................................................... Passed 0.66 sec
> Start 417: app_test_yara
> 410/417 Test #403: app_test_razers ................................................................... Passed 55.12 sec
> 411/417 Test #417: app_test_yara ..................................................................... Passed 0.19 sec
> 412/417 Test #79: test_journaled_string_tree_find ................................................... Passed 74.16 sec
> 413/417 Test #413: app_test_snp_store ................................................................ Passed 26.60 sec
> 414/417 Test #402: app_test_rabema ................................................................... Passed 66.97 sec
> 415/417 Test #415: app_test_stellar .................................................................. Passed 23.99 sec
> 416/417 Test #393: app_test_dfi ...................................................................... Passed 95.44 sec
> 417/417 Test #394: app_test_fiona .................................................................... Passed 100.60 sec
>
> 99% tests passed, 1 tests failed out of 417
>
> Total Test time (real) = 113.01 sec
>
> The following tests FAILED:
> 278 - test_demo_tutorial_journaled_set_solution_online_search_finder (Failed)
> Errors while running CTest
> make[1]: *** [Makefile:112: test] Error 8
> make[1]: Leaving directory '/<<BUILDDIR>>/seqan2-2.4.0+dfsg/obj-x86_64-linux-gnu'
> dh_auto_test: cd obj-x86_64-linux-gnu && make -j8 -Oline test ARGS\+=-j8 returned exit code 2
The full build log is available from:
http://aws-logs.debian.net/2018/05/02/seqan2_2.4.0+dfsg-8_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
More information about the Debian-med-packaging
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