[Debian-med-packaging] Bug#899129: prime-phylo: FTBFS: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2

[Dominic Hargreaves]

On Sun, May 20, 2018 at 10:11:58AM +0300, Juhani Numminen wrote:
> Control: tags -1 moreinfo
> 
> On Sat, 19 May 2018 18:01:53 +0200 Dominic Hargreaves <dom at earth.li> wrote:
> 
> > When testing packages against the upcoming release of perl, we found
> > an unrelated FTBFS on a clean sid chroot:
> > 
> > cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/prime && /usr/bin/c++  -DONLY_ONE_TIMESAMPLE -DPERTURBED_NODE -Dprime_phylo_EXPORTS -I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/cxx/libraries/prime -I/<<PKGBUILDDIR>>/src/cxx/libraries/prime -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/ompi/mpi/cxx -I/usr/include/libxml2 -I/<<PKGBUILDDIR>>/src/cxx/libraries -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/ompi/mpi/cxx -I/usr/lib/openmpi/include/openmpi/ompi/mpi/cxx  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wreorder -Wall -fexceptions -g -fPIC   -std=gnu++98 -o CMakeFiles/prime-phylo.dir/TreeIO.cc.o -c /<<PKGBUILDDIR>>/src/cxx/libraries/prime/TreeIO.cc
> > make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> > make[2]: *** [CMakeFiles/Makefile2:137: src/cxx/libraries/prime/CMakeFiles/prime-phylo.dir/all] Error 2
> > make[1]: *** [Makefile:155: all] Error 2
> > dh_auto_build: cd obj-x86_64-linux-gnu && make -j8 -Oline returned exit code 2
> > make: *** [debian/rules:10: build] Error 25
> 
> Hi,
> 
> do you have the whole build log? Any lines containing "error:" might be relevant,
> even if they were in the middle of the log :-) 
> 
> If there's something like
> > ..../PrimeOptionMap.hh:162:33: error: .... should have been declared inside 'beep'
> the issue might be the same as #897837.

Apologies, here's the full build log.

Cheers,
Dominic.
-------------- next part --------------
A non-text attachment was scrubbed...
Name: prime-phylo_1.0.11-4_amd64-2018-05-19T15:09:31Z.build.gz
Type: application/gzip
Size: 18073 bytes
Desc: not available
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20180520/32688d11/attachment-0001.gz>